[Genome] Output interpretation help
Gonzales-Sanchez, Ester
K0435205 at kingston.ac.uk
Tue Mar 4 09:44:48 PST 2008
Dear Webmaster.
I need some help to be able to interpret the output of UCSC.I do not understand the output very well.
I have added the output of the molecule sequence I am interested in.How can I comment and interpret this output?.Adhesion molecule , Icam-1.
TWhat to bars and arrows means ?Blue,green,red and black colours.How can I interepret SNPs?
position/search size 14,382 bp.
<http://genome.ucsc.edu/trash/hgtIdeo/hgtIdeo_genome_60b0_d89c20.gif>
<http://genome.ucsc.edu/trash/hgt/hgt_genome_60b0_d89c40.gif>
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Click on a feature for details. Click on base position to zoom in around cursor. Click gray/blue
>ref|NC_000019.8|NC_000019:10237779-10242779 Homo sapiens chromosome 19, reference assembly, complete sequence
GTCTCGAACTCCTGACCTCAGGTGATTCTCCTGCCTTGGCCTCCCAAAGTGCTGAGATTACAGGTGTGAG
CCACTGCACACGGCCTTAAATTTTATTTATTATTTATTTATTTATTTATTTAGAGACTTAGTCTCACTCT
GTTGCCCAGGCTGGAGTGCAGTGGCATGGTCTCGGCTCACTGCACTCCACCTCCTGGGTTCACGCCATTC
TCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCACCACTCCCGGCTAATTTTTGTATTT
TTAGTAGAGATGGGGTTTCACTGTGTTAGCCAGGATAGTCTCGATCTCCTGACCTCGTGATCCGCCTGCC
TCGGCCTCCCAAAGTGCTGGGATTACTTATTTTGTTTTTTGTAGAGACAGGTTCTCACTGTGTTGCCCAG
GCTGGTCTTGAACTCCTGATCTCAAGTGATCTTCCCACCTCAGTCTCTCAAAGGGCTGGGATTACAGGGG
TGAGCCACTGCACCCCACCTTCCCTCTACTTTTTGACGGTTTCCTTCTGCTATGAATGTGCATGTCCAGT
TGTCTGCTTCTTAGAACTGATATTTACCTTCCTCATCCATCAGCCATTGGAGGAGGACTGGGACCGCTCA
GATTATTGATCTGACCCATTCTTTCGGCAGGGTTTCCTGGTGGCTGTCTTCCATCACCAAAACTGGAATC
AGAAGAGTTTCCATAGCCCTTTTTTTTTCCCCACATCTTTGCTGAAGCAGAGTTTTGAAAAACAAAACCA
CAAACTAAGCTATTCCCCAGAAGAAATCTGTAATCAAAGATAAGCTCTGCCGGGCACAGTGGCTCACGCC
TTTTGGAGGCCAAGGCGGGCGGATCACCTGAGGTCAGGAGTTCTAGACCTGCCAGGCCAACATGGTAAAA
CCTCATCTCTACTAAAAATACAAAAATTAGCTAGATGTGGTGGTGGGTACCTGTAGTCTCAGCTACCTGG
GAGGCTGAGGCAAGAGAATCGCTTGAACCTGGGAAGTAGAGGTTGCAGTGAGCCGAGATTGCACCACTGC
ACTCCAGCCTGGGCGACGGAGTGAGACGACCTCACAAAAATTTACATAAATAAAATGAAAAGTAAAATAA
AAATACAAAAGTTGGCCGGGTGCGTTTGCTCACGCCTGTAATCCCAGCACTTTGGGAGGGTGAGGCAGGC
AGATAATGAGGTAAGAAGATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACA
AAAAATTAGCTGTGCGTGGTGACACGCACCTGTAGTCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATCA
CTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCCACAGAG
TGAGACTCCATCTTGAAAAAAAAAAAAAATACAAAAGTTAGCCAGGGGTGTTGGTGGGTGCCTGTAATCC
CAGCTATTTGGGAGGCTAAGGCAGAAGAATTTCTTGAACCTAGGAAACGGAGGTTGCAGTGAGCCGAGAT
CACACCTCTGTACTCCAGCCTGGACAACAGAGCGAGACTTTGTCTCAAAAAAAAAAAAAAAAAAAAAACT
AAATAGGCCGGGAGCAGTGGCTCATGCCTATAATCCCAGCCCTTTGGGAGGCCAAGGCAGGTGGATCACT
TGAGGTCAGGAGTTTGAGACCAGGCTGGCCAACATGGTGTAACCCCGTCTCTACTAAAAACACAAAAATT
AGCCGGGTCTGGTGGCGTATGTCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTAAAC
CTGGGAGGCAGGGGTTGCAGTGAGCTGAGATCGTGCCACTGCACTCTAGCCAGGGTGACAGAGTGAAACT
CTGTCTCAAAAAATTAAAAAAGAAATTCAGCAAGTAATGAGTTAAGGAATTCGAATATTAAGGCGAGTGA
CAAGGAACGCCCAGGATGTGGCCCAGGATGGAGTAGGGGGGACACTCATTTAGGAGAAAGCTCAGGCCAC
AAGACAGGAGGAGCCAGCCTTGTTGGGGTTGAAGGGAAGAGCATTCCAGGCTGAGGGAACTGCAAGGCGT
TTGCATGGGACACTATGGGATGGCTTCTGCCCTTGGTGGGCAGCCTCTGGTCTGAGGCCATTCTTTGGCC
TCTTGAACTCCTGGGCTCAAGTGATCCTCCCATCTCGGCCTCCCAAAATGCTGGGATTACAGGTGGGAGC
CGCGCCCAGGTGGATTTTTGTCTGACTCTGTTCATTCCTGTGTCCCCAGTACCTGGAAGGACGCCAAGCA
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