[Genome] 12 Fly protein alignment for CDs only

[Ann Zweig]

Hello Lax,

	Unfortunately this information is not readily downloadable from the 
browser.  All of the alignment sequence is kept in dna form.  The codon 
translation is done on the fly (no pun intended) for display purposes 
only.  My only suggestion would be for you to center on the region you 
are interested in then make a PDF file of the browser image (choose 
"PDF/PS" from the top blue menu bar).  From that image you could 
cut-n-paste the protein alignment from the coding regions.  Sorry I 
can't offer a better solution than this.

Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu





Lakshmanan Iyer wrote:
> Hi
> In the D Mel genome browser, one can view the protein sequence  
> multiple sequence alignment when zoomed at base level.
> Is there a way to extract the protein alignment for the coding  
> regions only?
> -Thanks
> -Lax
> http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
> 
> 
> 
> 
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