[Genome] blat

[Ann Zweig]

Hello Heather,

	Yes, the red lines represent mismatches between your BLATted sequence 
and the underlying genomic sequence.  If you zoom in to base level, you 
will see the exact base that does not match.

Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu

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HEATHER BRUCE wrote:
> what are the red lines on the blat graphic? they are seen when you look at the blat track on the browser
> mismatches?
> thanks
> 
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