[Genome] Obtaining syntenic data from the Table browser

[Ester Feldmesser]

Hello,

I am interested in looking at syntenic data from mouse to other 
vertebrates. I have results from a ChIP on chip experiment, the results 
are a list of significant genomic fragments in bed format. I would like 
to create a correspondence map between the coordinates of the fragments 
in mouse and in other vertebrates. I tried to use the  Table Browser for 
this purpose, I created a custom track of my data and tried to obtain 
coordinates or sequences of the syntenic fragments, but I did not 
succeed. Is it possible to obtain syntenic coordinates or sequences 
using the Table browser or do I need to download the full alignment of 
mouse to other species and to parse it by myself? Could you please advice?

Thanks,
Esti

-- 
Ester Feldmesser, Ph.D.
Bioinformatics Unit, Department of Biological Services
Weizmann Institute of Science
Levine Building, Room 110
phone: +972-8-934-2614
email: ester.feldmesser at weizmann.ac.il