[Genome] human transcripts

[Gabriele Amore]

Hello and sorry for not being clear
I am trying to get the sequences for all human transcritps at once.
By transcripts I mean coding as well as non coding transcritps  (since a 
good portion of the  human genome is transcribed but it is not coding)
What I am trying to do is to have them mapped on the chromosomes to se 
their distribution in the different isochore families
Is there any place from which I an download them all at once? or is 
there any other way to get them?
Thanks a lot
Gabriele

Ann Zweig ha scritto:
 > Hello Gabriele,
 >
 >     I'm not sure I understand exactly what you are asking.  I will 
attempt to answer, but if it doesn't address your question, please feel 
free to write back to the list with more details.
 >
 >     To get the sequence and coordinates for any of the annotation 
tracks in the genome browser, you can use the Table Browser ('Tables' 
from the top blue navigation bar).  For example, if you would like to 
get the sequence and coordinates for all of the mRNAs in the latest 
human assembly, you would set up the Table Browser like so:
 >
 > clade:  Vertebrate
 > genome:  Human
 > assembly:  Mar 2006
 > group:  Genes and Gene Prediction Tracks
 > track:  RefSeq Genes
 > table: refGene
 > region:  genome
 >
 > output format:  sequence
 > output file: enter the name of the file to be saved to your computer.
 >
 >     Then press the "get output" button.  From the next page, choose 
'genomic' and press the "submit" button.  From the next page, choose 
what part of the mRNA you would like to see the sequence for, e.g. 
Exons, Introns, etc. then press the "get sequence" button.
 >
 >     A file containing the sequence you selected will be downloaded to 
your computer.  Each set of sequence will be preceded with the name and 
coordinates of the mRNA.
 >
 >     In the future, please direct your questions only to the genome 
mailing list at genome at soe.ucsc.edu (no need to copy the genome-mirror 
mailing list).
 >
 >
 > Regards,
 >
 > ----------
 > Ann Zweig
 > UCSC Genome Bioinformatics Group
 > http://genome.ucsc.edu
 >
 > Please feel free to search the Genome mailing list archives by 
visiting our home page, clicking on "Contact Us", then typing a word or 
phrase into the search box.  On that same page
 > (http://genome.ucsc.edu/contacts.html), you can subscribe to the 
Genome mailing list.
 >
 >
 > Gabriele Amore wrote:
 >> Hi,
 >>
 >> How can I download the sequences for all human transcripts (genic 
and non genic)?
 >> Is there any place I can find the sequences or the coordinates 
(better both)?
 >>
 >>
 >> Thanks so much for any help
 >> Gabriele Amore
 >> _______________________________________________
 >> Genome maillist  -  Genome at soe.ucsc.edu
 >> http://www.soe.ucsc.edu/mailman/listinfo/genome