[Genome] GeneSorter References

[Galt Barber]

If you are interested in the HPRD P2P interaction distance column,
you can see it's desciption page here:

http://genome.ucsc.edu/cgi-bin/hgNear?hgsid=102348218&near.do.colInfo=hprdP2p

We filtered out paths of length greater than two
because of exponential growth of lower-value interaction paths.

Our length 1 (and 0) paths should correspond to what you see
on the HPRD site, and the other (71 - 8 = 63) paths would probably
be interactions between those 8 and other proteins, for
a length of 2.  Without knowing the gene and assembly you
were looking at, this is just my speculation.

If you want more details about the exact construction
of our p2p paths, you would need to look at our make-docs.

We also have p2p interaction data from the E. Vidal and M. Wanker studies.

-Galt


On Fri, 11 Jan 2008, Edward Herman wrote:

> Hi,
> We have recently used the Gene Sorter tool on our gene of interest, and
> found a striking overlap between the list that this tool generated and our
> own data.  We would like to know more about what publications or results the
> Gene Sorter is based on and how we can access them.  In particular, we are
> interested in the HRPD Protein-Protein interaction database.  We tried their
> website (www.hprd.org) searching on our gene and clicking the "Interactions"
> tab, but only a subset (8 out of 71) appear here with links to publications.
>
> Can you tell us more about what data was used to generate the HRPD
> Protein-Protein interaction database on the Gene Sorter tool?
>
> Thanks,
> Eddie
> Geschwind Lab, UCLA
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