[Genome] Difference in nucleotide counts
Li, Jianying (NIH/NIEHS) [C]
li11 at niehs.nih.gov
Fri Jan 11 11:31:55 PST 2008
Dear admin,
I am currently working on a project and need to get the total count of
nucleotides of human hg-17. After I finished the counting, I compared
with the statistics listed on the genome browser's page:
http://genome.ucsc.edu/goldenPath/stats.html#hg17
Chr Assembled Size Sequenced I counted
1 247249719 224999719 245522847
2 242951149 237712649 243018229
3 199501827 194704827 199505740
4 191273063 187297063 191411218
5 180857866 177702766 180857866
6 170899992 167273992 170975699
7 158821424 154952424 158628139
8 146274826 142612826 146274826
9 140273252 120143252 138429268
10 135374737 131624737 135413628
11 134452384 131130853 134452384
12 132349534 130303534 132449811
13 114142980 95559980 114142980
14 106368585 88290585 106368585
15 100338915 81341915 100338915
16 88827254 78884754 88827254
17 78774742 77800220 78774742
18 76117153 74656155 76117153
19 63811651 55785651 63811651
20 62435964 59505253 62435964
21 46944323 34171998 46944323
22 49691432 34851332 49554710
X 154913754 151058754 154824264
Y 57772954 25652954 57701691
M 16571 16571 16571
Total 3080436051 2858034764 3076798458
Among these chromosomes, some match but some don't. Could you please
help me explain why?
Your any attention is appreciated.
Jianying Li
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