[Genome] download of ucsc known genes

Kayla Smith kayla at soe.ucsc.edu
Thu Jan 10 17:29:41 PST 2008


Hello Areum,

Yes, the knownGene table is downloadable here:
http://hgdownload.cse.ucsc.edu/goldenPath/mm8/database/knownGene.txt.gz

The mm8.knownGene table does not contain sequence data, so I'm not sure 
how you are searching.   If you want to find more information about the 
sequence you've pasted, you could try BLATing it.  Click on "BLAT" on 
the blue bar on the top of the main page.

I hope this helps.

Kayla Smith
UCSC Genome Bioinformatics Group



Areum Han wrote:
> Hi. the ucsc known genes table is downloadable in the table browser?
> 
> I downloaded knowngene table from table bowser but it does not have below exon, which is visible in genome browser. 
> 
>  
> 
>> exon_mm8
> 
> TTGACCCATTGATCGATGATTACTCTGGAAGTGGAGgcaaat
> 
> 
> 
> Sincerely yours,
> 
> Areum Han.
> 
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome



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