[Genome] Clone RP23-473N24

[Ann Zweig]

Hello Remi,

	We have added this clone to the mm9 BAC End Pairs annotation track.

Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu


Hiram Clawson wrote:
> Good Afternoon Dr. Terranova:
> 
> I am investigating why this clone does not show up on the
> UCSC mouse genome browser for July 2007 (UCSC mm9/NCBI 37) compared
> to the March 2005 (UCSC mm6/NCBI 34) version.  I do note the
> clone end sequences AZ095043 and AZ095046 do map correctly
> to the July 2007 sequence in the location: chr7:150,015,500-150,194,000
> on the same contig NT_039437 as the March 2005 sequence.
> 
> This would indicate this is a valid clone even on the newer assemblies.
> I will have to determine why it is missing from the BacEnd track.
> 
> Please note, the genome email list is the correct address
> for questions on the genome browser.
> 
> --Hiram
> 
> -------- Original Message --------
> Subject: [Genome] Clone RP23-473N24
> Date: Tue, 8 Jan 2008 11:30:38 +0100
> From: Terranova, Remi <remi.terranova at fmi.ch>
> To: <genome at soe.ucsc.edu>
> 
> To whom it may concern,
> 
> Over the last two years, I have used one clone I chose from UCSC genome browser, RP23-473N24 for FISH analyses. It seems like this 
> clone is not available anymore from the UCSC browser and I wondered what may be wrong with it.
> 
> This is important for my purpose as I have based many of my analyses on FISH detection using this BAC clone. I would be grateful if 
> you could tell me whether anything is wrong with this RP23-473N24 clone.
> 
> With best wishes,
> 
> Remi Terranova
> 
> 
> RP23-473N24, Mouse Chr7, qF5. Originally located between RP23-71O21 and MSMG01-379L13
> - Assembly: Mouse - March 2005
> - Track: BAC End Pairs
> - Kcnq1 locus: chr7: 137,000,000 - 138,000,000
> 
> ---------------------------------------------------------------
> 
> Dr. Rémi Terranova
> Friedrich Miescher Institute (FMI)
> Novartis Research foundation
> Maulbeerstrasse 66
> 
> CH-4058 Basel, Switzerland
> 
> Phone: +41 61 697 6100
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
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