[Genome] Clone RP23-473N24

[Hiram Clawson]

Good Afternoon Dr. Terranova:

I am investigating why this clone does not show up on the
UCSC mouse genome browser for July 2007 (UCSC mm9/NCBI 37) compared
to the March 2005 (UCSC mm6/NCBI 34) version.  I do note the
clone end sequences AZ095043 and AZ095046 do map correctly
to the July 2007 sequence in the location: chr7:150,015,500-150,194,000
on the same contig NT_039437 as the March 2005 sequence.

This would indicate this is a valid clone even on the newer assemblies.
I will have to determine why it is missing from the BacEnd track.

Please note, the genome email list is the correct address
for questions on the genome browser.

--Hiram

-------- Original Message --------
Subject: [Genome] Clone RP23-473N24
Date: Tue, 8 Jan 2008 11:30:38 +0100
From: Terranova, Remi <remi.terranova at fmi.ch>
To: <genome at soe.ucsc.edu>

To whom it may concern,

Over the last two years, I have used one clone I chose from UCSC genome browser, RP23-473N24 for FISH analyses. It seems like this 
clone is not available anymore from the UCSC browser and I wondered what may be wrong with it.

This is important for my purpose as I have based many of my analyses on FISH detection using this BAC clone. I would be grateful if 
you could tell me whether anything is wrong with this RP23-473N24 clone.

With best wishes,

Remi Terranova


RP23-473N24, Mouse Chr7, qF5. Originally located between RP23-71O21 and MSMG01-379L13
- Assembly: Mouse - March 2005
- Track: BAC End Pairs
- Kcnq1 locus: chr7: 137,000,000 - 138,000,000

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Dr. Rémi Terranova
Friedrich Miescher Institute (FMI)
Novartis Research foundation
Maulbeerstrasse 66

CH-4058 Basel, Switzerland

Phone: +41 61 697 6100