February 2008 Archives by thread

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Starting: Fri Feb 1 03:49:36 PST 2008
Ending: Fri Feb 29 16:33:41 PST 2008
Messages: 230

• [Genome] karyoview and retrieving features   João Fadista
  • [Genome] karyoview and retrieving features   Hiram Clawson
• [Genome] Informations request   angelique.chauvin at free.fr
  • [Genome] Informations request   Ann Zweig
• [Genome] human 3' utr seqs that do not cross hyb to orthologous rat gene seqs   Richard Dixon
  • [Genome] human 3' utr seqs that do not cross hyb to orthologous rat gene seqs   Ann Zweig
• [Genome] sequence discrepancy   Stephen Brown
• [Genome] Dealay warning   Robert Kuhn
• [Genome] interupted repeats track in UCSC genome browser   angie at soe.ucsc.edu
• [Genome] conversion of genome coordinates between genome assemblies   Ann Zweig
• [Genome] Genome Browser - Affy data for D. Melanogaster Release 5   Kenneth Wan
  • [Genome] Genome Browser - Affy data for D. Melanogaster Release 5   Ann Zweig
• [Genome] Question on the exon structure   Galt Barber
• [Genome] Conversion between hg17 and hg18 coordinates   Jim Huang
• [Genome] Conversion from hg17 to mm9 coordinates   Jim Huang
  • [Genome] Conversion from hg17 to mm9 coordinates   Ann Zweig
• [Genome] sequence discrepancy   Robert Kuhn
• [Genome] miRNA genomic position   Patrick Buckley
  • [Genome] miRNA genomic position   Kayla Smith
• [Genome] Trouble with BLAT to align SNPs   Galt Barber
• [Genome] A question about liftover program   Brooke Rhead
• [Genome] Annotation for a gene   Hao Chen
  • [Genome] Annotation for a gene   Brooke Rhead
• [Genome] ?'s about sequence alignments via UCSC genome   Aaron Fletcher
  • [Genome] ?'s about sequence alignments via UCSC genome   Brooke Rhead
• [Genome] new bovine genome build   Scott C. Fahrenkrug
  • [Genome] new bovine genome build   Ann Zweig
• [Genome] Where are the promoters and PlyA in Genescan (BED)   Ricardo Godinez Moreno
  • [Genome] Where are the promoters and PlyA in Genescan (BED)   Hiram Clawson
• [Genome] downloading fosmid sequence   Chaofu Shi
  • [Genome] downloading fosmid sequence   Ann Zweig
• [Genome] RepeatMasker .out file for bosTau2   Kayla Smith
• [Genome] Processed pseudogenes   Rebecca Robilotto
  • [Genome] Processed pseudogenes   Ann Zweig
• [Genome] Question about UCSC genome browser.   Wei Guo
  • [Genome] Question about UCSC genome browser.   Ann Zweig
• [Genome] Making predicted protein sequence.   Mahmudul Hasan
  • [Genome] Making predicted protein sequence.   Kayla Smith
• [Genome] Divergence calculation   Qin, Chunhua
  • [Genome] Divergence calculation   Kayla Smith
    • [Genome] Divergence calculation   Kayla Smith
• [Genome] Btau 4.0 (cow)   Danielle Lemay
  • [Genome] Btau 4.0 (cow)   Kayla Smith
• [Genome] wigEncode   Roh, Tae-Young (NIH/NHLBI) [F]
  • [Genome] wigEncode   Hiram Clawson
• [Genome] Where to download these genome files   Ma, Jin
  • [Genome] Where to download these genome files   Brooke Rhead
• [Genome] Problems with FTP connection   Geoffroy Véronique
  • [Genome] Problems with FTP connection   Brooke Rhead
• [Genome] Bee genome   Brian Herb
  • [Genome] Bee genome   Brooke Rhead
• [Genome] Conservation scores   Jeffrey Rosenfeld
  • [Genome] Conservation scores   Brooke Rhead
• [Genome] Public repository for SNP data   Darrell Ellsworth
  • [Genome] Public repository for SNP data   Kayla Smith
    • [Genome] Public repository for SNP data   Brooke Rhead
      • [Genome] Public repository for SNP data   Masakazu Kohda
      • [Genome] Public repository for SNP data   Darrell Ellsworth
• [Genome] 3'utr coordinates from the table browser   Wen Huang
  • [Genome] 3'utr coordinates from the table browser   Brooke Rhead
• [Genome] Accessing UCSC database using mysql client within Matlab   David Salako
  • [Genome] Accessing UCSC database using mysql client within Matlab   Brooke Rhead
• [Genome] self pair wise alignment file for mm   Areum Han
  • [Genome] self pair wise alignment file for mm   Kayla Smith
• [Genome] question on downloading est/genomic alignments info   Qu Zhang
  • [Genome] question on downloading est/genomic alignments info   Brooke Rhead
• [Genome] exonWalk.txt missing in hg18?   Sakabe, Noboru [BSD] - HGD
  • [Genome] exonWalk.txt missing in hg18?   Kayla Smith
• [Genome] downloading specific type of repeats   Maria Astrom
  • [Genome] downloading specific type of repeats   Brooke Rhead
• [Genome] hg18, is static data?   Enrique M. Muro
  • [Genome] hg18, is static data?   Brooke Rhead
• [Genome] file conversion   Beate Glaser
  • [Genome] file conversion   Brooke Rhead
    • [Genome] file conversion   Brooke Rhead
    • [Genome] file conversion   Beate Glaser
• [Genome] different fonts?   Gogol, Madelaine
  • [Genome] different fonts?   Hiram Clawson
• [Genome] nevermind about "different fonts?"   Gogol, Madelaine
• [Genome] Extended DNA case/color options   Matt Johnson
  • [Genome] Extended DNA case/color options   Brooke Rhead
• [Genome] Gene ontology annotations   Barb, Jennifer (NIH/CIT) [E]
  • [Genome] Gene ontology annotations   Brooke Rhead
• [Genome] 3' fasta sequence   Lana Schaffer
  • [Genome] 3' fasta sequence   Brooke Rhead
    • [Genome] 3' fasta sequence   Lana Schaffer
      • [Genome] 3' fasta sequence   Brooke Rhead
• [Genome] Hpa II sites count   joseph
  • [Genome] Hpa II sites count   Hiram Clawson
• [Genome] housekeeping genes and tissue specific genes   Maria Astrom
  • [Genome] housekeeping genes and tissue specific genes   Frans Schuit
    • [Genome] housekeeping genes and tissue specific genes   Brooke Rhead
• [Genome] Table browser SNP vs genomic coordinates   Robert Osborne
  • [Genome] Table browser SNP vs genomic coordinates   Brooke Rhead
• [Genome] itemRgb in gff?   Ben Berman
  • [Genome] itemRgb in gff?   Brooke Rhead
  • [Genome] itemRgb in gff?   Hiram Clawson
• [Genome] Error when searching for position of p53   WANG Ping
• [Genome] Error when searching for position of p53   Robert Kuhn
  • [Genome] Error when searching for position of p53   WANG Ping
• [Genome] human-mouse homologues   Bogdan Tanasa
  • [Genome] human-mouse homologues   Kayla Smith
• [Genome] Annotation display modification   Huidong Wang
  • [Genome] Annotation display modification   Hiram Clawson
• [Genome] opossum DSPP DNA sequence   helenar at umich.edu
  • [Genome] opossum DSPP DNA sequence   Kayla Smith
• [Genome] How to convert chain or net to maf   Christian Roedelsperger
  • [Genome] How to convert chain or net to maf   Kayla Smith
    • [Genome] How to obtain reverse complement MAF alignment   Cook, Malcolm
      • [Genome] How to obtain reverse complement MAF alignment   Kayla Smith
• [Genome] Error when searching for position of p53   Robert Kuhn
  • [Genome] Error when searching for position of p53   WANG Ping
    • [Genome] Error when searching for position of p53   Hiram Clawson
      • [Genome] Error when searching for position of p53   WANG Ping
      • [Genome] Error when searching for position of p53   Hiram Clawson
      • [Genome] Error when searching for position of p53   Angie Hinrichs
      • [Genome] Error when searching for position of p53   WANG Ping
  • [Genome] Error when searching for position of p53   WANG Ping
• [Genome] snp126 'func' field clarification,   Vinodh Srinivasasainagendra
  • [Genome] snp126 'func' field clarification,   Kayla Smith
• [Genome] new Track   Dag Yasui
  • [Genome] new Track   Kate Rosenbloom
• [Genome] UCSC In-Silico PCR   Abdulkarim, Ibrahim
  • [Genome] UCSC In-Silico PCR   Kayla Smith
• [Genome] BAC clones   Svetlana Vinogradova
  • [Genome] BAC clones   Brooke Rhead
• [Genome] Affy all exon table   ravid straussman
  • [Genome] Affy all exon table   Kayla Smith
• [Genome] hi, on chainself table of dm3   pkuonline
  • [Genome] hi, on chainself table of dm3   Kayla Smith
• [Genome] Aquifex aeolicus genome question   Tali Goren
  • [Genome] Aquifex aeolicus genome question   Kayla Smith
• [Genome] displaying TF bindinig sites   bina at purdue.edu
  • [Genome] displaying TF bindinig sites   Brooke Rhead
• [Genome] PicTar Track   Jugurnauth, Sarah
  • [Genome] PicTar Track   Brooke Rhead
• [Genome] Question about Synteny between C. elegans and C. Briggsae   Rebecca Robilotto
• [Genome] help with some tables   אסתי קומר
• [Genome] gfPcr with no output file   JIMMY LIN
  • [Genome] gfPcr with no output file   Brooke Rhead
• [Genome] hgWiggle   Jeffrey Rosenfeld
  • [Genome] hgWiggle   Hiram Clawson
• [Genome] Color probesets   Kulkarni, Amit (Rosetta)
  • [Genome] Color probesets   Kayla Smith
• [Genome] Gene Sorter   Huskey, Margaret
  • [Genome] Gene Sorter   Brooke Rhead
• [Genome] Question about Synteny between C. elegans and C. Briggsae   Robert Kuhn
• [Genome] help with some tables   Robert Kuhn
  • [Genome] help with some tables   אסתי קומר
• [Genome] Upstream sequences   Elena Grassi
  • [Genome] Upstream sequences   Brooke Rhead
• [Genome] (no subject)   re at science.unitn.it
  • [Genome] (no subject)   Brooke Rhead
• [Genome] UTR sequence retrieval   Toma Tebaldi
  • [Genome] UTR sequence retrieval   Brooke Rhead
• [Genome] GenBank ids   re at science.unitn.it
  • [Genome] GenBank ids   Brooke Rhead
• [Genome] Where is the snp gene annotation file   Jie Huang
  • [Genome] Where is the snp gene annotation file   Brooke Rhead
• [Genome] Error when searching for position of p53   Robert Kuhn
• [Genome] help with some tables   Robert Kuhn
• [Genome] color information in EvoFold alignment   Robert Piskol
  • [Genome] color information in EvoFold alignment   Brooke Rhead
• [Genome] hi, on chainself table of dm3   Yong Zhang
• [Genome] kgId mean   Yuan Jian
  • [Genome] kgId mean   Kayla Smith
• [Genome] faSize   guang-zhong wang
  • [Genome] faSize   Hiram Clawson
• [Genome] Error when searching for position of p53   Robert Kuhn
• [Genome] UTR sequence retrieval   Toma Tebaldi
  • [Genome] UTR sequence retrieval   Kayla Smith
• [Genome] Obtain FASTA sequence of all features in a track   S Parghi
  • [Genome] Obtain FASTA sequence of all features in a track   Kayla Smith
• [Genome] 7-Way Alignment   Peter Robinson
  • [Genome] 7-Way Alignment   Kate Rosenbloom
    • [Genome] 7-Way Alignment   Peter Robinson
• [Genome] How to create a custom track with ChIP data on Genome browser   Xiao, Wenming (NIH/CIT) [E]
  • [Genome] How to create a custom track with ChIP data on Genome browser   Kayla Smith
• [Genome] regarding table browser   Vinay Kumar Mittal
  • [Genome] regarding table browser   Kayla Smith
• [Genome] gnfHumanAtlas2Groups not found   WANG Ping
  • [Genome] gnfHumanAtlas2Groups not found   Hiram Clawson
    • [Genome] gnfHumanAtlas2Groups not found   WANG Ping
      • [Genome] gnfHumanAtlas2Groups not found   Hiram Clawson
      • [Genome] gnfHumanAtlas2Groups not found   WANG Ping
      • [Genome] gnfHumanAtlas2Groups not found   Brooke Rhead
      • [Genome] gnfHumanAtlas2Groups not found   WANG Ping
• [Genome] blat: any hidden limits?   Isaac Ho
  • [Genome] blat: any hidden limits?   Hiram Clawson
  • [Genome] blat: any hidden limits?   Isaac Ho
    • [Genome] blat: any hidden limits?   Hiram Clawson
• [Genome] Fosmid sources   massimo crippa
  • [Genome] Fosmid sources   Kayla Smith
• [Genome] help with some tables   Robert Kuhn
  • [Genome] help with some tables   אסתי קומר
• [Genome] uc001aaw.1   Yuan Jian
  • [Genome] uc001aaw.1   Brooke Rhead
    • [Genome] uc001aaw.1   Brooke Rhead
• [Genome] (no subject)   re at science.unitn.it
  • [Genome] (no subject)   Hiram Clawson
    • [Genome] (no subject)   Brooke Rhead
• [Genome] genomes on BLAT   Daudi Arsalan
• [Genome] UCSC Genome Browser - width of display, identifiers   Anton Kratz
  • [Genome] UCSC Genome Browser - width of display, identifiers   Hiram Clawson
• [Genome] UCSC Genome Browser - width of display, identifiers   Robert Kuhn
• [Genome] genomes on BLAT   Robert Kuhn
• [Genome] help with some tables   Robert Kuhn
• [Genome] SNP present of dbSNP but absent on UCSC tables   Inti Pedroso
  • [Genome] SNP present of dbSNP but absent on UCSC tables   Brooke Rhead
• [Genome] DNase Hypersensitive sites in zebrafish   Deborah Ritter
  • [Genome] DNase Hypersensitive sites in zebrafish   Brooke Rhead
• [Genome] UCSC file   Ann Zweig
• [Genome] How to align a sequence to a maf file?   Wang JianLi
• [Genome] problem with browser   Hall, Otis
  • [Genome] problem with browser   Kayla Smith
• [Genome] here is the new problem   Hall, Otis
• [Genome] Application of MULTIZ   Christian Rödelsperger
  • [Genome] Application of MULTIZ   Kate Rosenbloom
• [Genome] Annotation display modification   Huidong Wang
  • [Genome] Annotation display modification   Kayla Smith
• [Genome] KATE: [Fwd: How to align a sequence to a maf file?]   Kate Rosenbloom
• [Genome] liftOver difficulties   NATALIA WESOLOWSKA
  • [Genome] liftOver difficulties   Ann Zweig
• [Genome] ftp access denied   Lakshmanan Iyer
  • [Genome] ftp access denied   Ann Zweig
• [Genome] Advice on installation   Ma, Jin
  • [Genome] Advice on installation   Ann Zweig
• [Genome] hold a session record   Ginger Cheng
  • [Genome] hold a session record   Ann Zweig
    • [Genome] hold a session record   Ann Zweig

Last message date: Fri Feb 29 16:33:41 PST 2008
Archived on: Fri Feb 29 16:33:46 PST 2008

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