[Genome] Public repository for SNP data

[Darrell Ellsworth]

Thank you so very much for all of your assistance. Looks like dbSNP is
the way we will go!

-----Original Message-----
From: Brooke Rhead [mailto:rhead at soe.ucsc.edu] 
Sent: Monday, February 11, 2008 1:39 PM
To: Darrell Ellsworth
Cc: genome at soe.ucsc.edu
Subject: Re: [Genome] Public repository for SNP data

Hi Darrell,

Let me add to what my colleague has said.  If you are looking to submit 
SNP array data to a public repository, dbSNP is the right place for
that.

There is a 'SNP SUBMISSION' link on the left pane of this page:
http://www.ncbi.nlm.nih.gov/projects/SNP/

http://www.ncbi.nlm.nih.gov/projects/SNP/how_to_submit.html

I hope this information is helpful.

--
Brooke Rhead
UCSC Genome Bioinformatics Group


Kayla Smith wrote:
> Hello Darrell,
>
> I can tell you what resources we have available for you:
>
> 1.  We have a SNP track and an SNP array track on our Browser.  Here
is 
> a session with those two tracks turned on:
>
>
http://genome.cse.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_o
therUserName=Kayla&hgS_otherUserSessionName=hg18%2Daffysnp
>
> You can click on the blue bar on the left hand side of either of those

> tracks to read more information on how they're created.
>
> 2.  We get our SNP data from dbSNP:
> http://www.ncbi.nlm.nih.gov/SNP/
>
> 3.  If you're looking for some specific raw data, it's probably best
to 
> contact the people who generated that data.   You could also try
asking 
> Affymetrix, if you think it's something that they would have:
>
> http://affymetrix.com/index.affx
>
> I hope this points you in a useful direction.  Please don't hesitate
to 
> contact us again if we can be of further assistance.
>
> Kayla Smith
> UCSC Genome Bioinformatics Group
>
>
> Darrell Ellsworth wrote:
>   
>> Hello,
>>
>>  
>>
>> I am trying to identify a public repository for raw data from 500K
>> (Affy) SNP files. This data was used to generate a manuscript in
press
>> in the Journal of Molecular Diagnostics and they require submission
of
>> the data to a public database. All I have found thus far are gene
>> expression data repositories.
>>
>>  
>>
>> Thanks for any assistance you can provde.
>>
>> _______________________________________________
>> Genome maillist  -  Genome at soe.ucsc.edu
>> http://www.soe.ucsc.edu/mailman/listinfo/genome
>>     
>
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome
>