[Genome] Divergence calculation

[Qin, Chunhua]

Hi,

How were the divergence numbers (milliDiv, milliDel, milliIns in the
following table) for the repetitive elements generated? Can we assume
the milliDiv is the "sum" of milliDel and milliIns? If yes, why some
elements showed milliDiv>0 when both milliDel and milliIns are equal to
0 in the example below?

Thanks,

C.Q.  


#filter: chr12_rmsk.repName like 'IAPLTR%'
#milliDiv	milliDel	milliIns	genoName
genoStart	genoEnd	repName
28	0	44	chr12	48201400	48201742	IAPLTR2b
124	82	16	chr12	48518724	48519028	IAPLTR4
5	0	0	chr12	49633169	49633536
IAPLTR1_Mm
8	0	0	chr12	49639937	49640304
IAPLTR1_Mm
24	0	0	chr12	50095777	50096114
IAPLTR1a_Mm
21	0	0	chr12	50102541	50102878
IAPLTR1a_Mm
64	30	20	chr12	51010569	51010873	IAPLTR2b
32	12	10	chr12	51440316	51440726	IAPLTR2a
112	15	6	chr12	52554531	52554865
IAPLTR1a_Mm
118	50	44	chr12	52655062	52655221
IAPLTR4_I
12	0	0	chr12	52682164	52682490	IAPLTR3

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