[Genome] computer-processable delimitation of pseudoautosomal regions
Ann Zweig
ann at soe.ucsc.edu
Wed Apr 30 13:48:59 PDT 2008
Hello Garret,
There is no database table containing the PAR region information. You
could certainly create your own custom track and use that table
programatically. To read about creating your own Custom Tracks, see the
User's Guide:
http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks
This should help you get started. If you run into problems, or have
specific questions, please don't hesitate to contact the mail list again.
Regards,
----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu
Garret Wilson wrote:
> I note at
>
> http://genome.ucsc.edu/cgi-bin/hgGateway
>
> that the NCBI Build 36.1 assembly contains two pseudoautosomal regions
> of chromosome Y. The page above lists those PAR ranges, along with the
> corresponding ranges on chromosome X.
>
> But is there any file that may be processed by a computer containing PAR
> ranges, analogous to the cytoband positions found in
> http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/cytoBand.txt.gz ?
>
> Thanks,
>
> Garret
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