[Genome] Need Help !

[Pauline Fujita]

Hello Prakher,

You can get the data in our "proteome" database using the Table Browser. 
After selecting your assembly of interest select:

    group: All Tables
    database: proteome
    identifiers: click on "paste list" and you can paste in glioma or 
astrocytoma identifiers relevant to the table you select

If you're not sure which tables you want to access, you can also click 
on "describe table schema" for any table and it will take you to a 
description of that table's contents. If you only want to retrieve 
certain columns from a given table you can also select:

    output format: "selected fields from primary and related tables"

Once you click on "get output" this will take you to a menu where you 
can specify which fields you want to retrieve from your tables of 
interest. 

Finally, if you are interested in downloading the entire "proteome" 
database for human you can go to the downloads section and click on 
"Protein database for hg18"  
(http://hgdownload.cse.ucsc.edu/goldenPath/proteinDB/proteins070202/database/).

Hopefully this information was helpful and answers your question. If you 
have further questions or require clarification feel free to contact the 
mailing list at genome at soe.ucsc.edu.

Regards,

Pauline Fujita
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu

Prakher Singhal wrote:
> Hello There,
>
>   I am looking for the proteomic data for glioma or astrocytoma (Human). I
> used your proteome Browser, Which is also very helpful, but we can't
> download the proteomic data from there. I tried your download section
> for this data but couldn't find it there.
>     It will be very helpful if you can provide the link to download the data.
>
> Have a nice day,
>
> Regards,
> Prakher Singhal
> Computer Programmer
> Institute of Bioinformatics and applied Biotechnology
> Bangalore 560 066,
> Tel: +91 (80) 2841-0029, 2841-2769
> Mob: +91 9886875191
> http://www.ibab.ac.in/
>
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