[Genome] nscan tracks

[Pauline Fujita]

Hello Yann Loe-Mie,

You can download the sequences associated with the N-SCAN track across 
whole genomes by using the table browser. After selecting your assembly 
of interest select:

group: Genes and Gene Prediction Tracks
track: N-SCAN
table: nscan Gene
region: click "genome"
output format: sequence

then click on "get output". This will take you to a menu where you can 
specify which parts of the sequence for each gene you want to retrieve, 
as well as the format of the output.

Hopefully this information was helpful and answers your question. If you 
have further questions or require clarification feel free to contact the 
mailing list at genome at soe.ucsc.edu.

Regards,

Pauline Fujita
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu

Yann Loe-Mie wrote:
> Hi,
> I retrieved successfully the nscanPep tracks for my favourite genomes, I 
> am happy with these but I would like also the coding sequences. In the 
> table nscanGene there are all the informations to get them but I have to 
> download several complete genomes and generate these coding sequences 
> based on your informations. Do you project to make a table with these 
> predicted sequences, since I think this will be helpful for many people.
> Thanks.
> Best regards.
>