[Genome] complete human protein sequence dataset

Robert Kuhn kuhn at soe.ucsc.edu
Tue Apr 8 08:54:45 PDT 2008


correction:  that's the knownGenePep table (no "s").

             --b0b kuhn

On Tue, 08 Apr 2008 07:48:45 -0800
  "Robert Kuhn" <kuhn at soe.ucsc.edu> wrote:
> Mark,
> 
> The protein sequences for the UCSC Genes track are found
> in the knownGenesPep table.  You can get them via the
> Table Browser.  For other gene-prediction tracks, there
> is usually a *Pep table as well.  They are also 
>available
> for bulk download in the downloads section.
> 
> best wishes,
>                            --b0b kuhn
>                            ucsc genome bioinformatics 
> group
> 
> On Mon, 07 Apr 2008 18:01:49 +0200
>  Mark Cock <cock at sb-roscoff.fr> wrote:
>> Hi,
>> 
>> I am looking for a complete list of proteins encoded by 
>>the human genome 
>> (with the protein sequences) for a comparative genomics 
>>project. Would 
>> you have such a thing or know where I could find the 
>>best compilation. I 
>> would prefer to have one protein per gene if possible, 
>>ie. not 
>> alteranative products due to alternative splicing.
>> 
>> Thanks in advance for your help.
>> 
>> best regards,
>> 
>> Mark
>> 
>> -- 
>> J. Mark Cock
>> Algal Genetics Group, UMR 7139 CNRS-UPMC
>> Végétaux Marins et Biomolécules (Marine Plants and 
>>Biomolecules)
>> Station Biologique, Place Georges Teissier, BP74
>> 29682 Roscoff Cedex, France
>> 48° 43' 37.33" N     3° 59' 17.41" W
>> Tel: 33 2 98 29 23 60, Fax: 33 2 98 29 23 85
>> Email: cock at sb-roscoff.fr
>> http://www.sb-roscoff.fr/UMR7139/en/genetics.html
>> 
>> _______________________________________________
>> Genome maillist  -  Genome at soe.ucsc.edu
>> http://www.soe.ucsc.edu/mailman/listinfo/genome
> 



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