[Genome] complete human protein sequence dataset
Robert Kuhn
kuhn at soe.ucsc.edu
Tue Apr 8 08:48:45 PDT 2008
Mark,
The protein sequences for the UCSC Genes track are found
in the knownGenesPep table. You can get them via the
Table Browser. For other gene-prediction tracks, there
is usually a *Pep table as well. They are also available
for bulk download in the downloads section.
best wishes,
--b0b kuhn
ucsc genome bioinformatics
group
On Mon, 07 Apr 2008 18:01:49 +0200
Mark Cock <cock at sb-roscoff.fr> wrote:
> Hi,
>
> I am looking for a complete list of proteins encoded by
>the human genome
> (with the protein sequences) for a comparative genomics
>project. Would
> you have such a thing or know where I could find the
>best compilation. I
> would prefer to have one protein per gene if possible,
>ie. not
> alteranative products due to alternative splicing.
>
> Thanks in advance for your help.
>
> best regards,
>
> Mark
>
> --
> J. Mark Cock
> Algal Genetics Group, UMR 7139 CNRS-UPMC
> Végétaux Marins et Biomolécules (Marine Plants and
>Biomolecules)
> Station Biologique, Place Georges Teissier, BP74
> 29682 Roscoff Cedex, France
> 48° 43' 37.33" N 3° 59' 17.41" W
> Tel: 33 2 98 29 23 60, Fax: 33 2 98 29 23 85
> Email: cock at sb-roscoff.fr
> http://www.sb-roscoff.fr/UMR7139/en/genetics.html
>
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