[Genome] expIds

[Ann Zweig]

Hello Sonja,

	You can find the tissue types for each of the GNF Atlas 2 tracks in the 
corresponding tables in the hgFixed database:

gnfHumanAtlas2AllExps
gnfMouseAtlas2AllExps

	To explore the contents of database tables, use the Table Browser tool 
on the website ('Tables' from the top blue navigation bar).

group: All Tables
database: hgFixed
table: hgFixed.gnfHumanAtlas2AllExps

output format: all fields from selected table

	The id and name fields contain the information you are looking for. 
For example, from the hgFixed.gnfHumanAtlas2AllExps table, the first 5 
rows are:

#id	name
0	ColorectalAdenocarcinoma
1	ColorectalAdenocarcinoma 2
2	WHOLEBLOOD
3	WHOLEBLOOD 2
4	BM-CD33+Myeloid


	You might also be interested in reading the paper associated with this 
track: http://www.pnas.org/cgi/content/abstract/101/16/6062

	I hope this information is helpful to you.  Please don't hesitate to 
contact the mail list again if you require further assistance.

Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu

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sonja althammer wrote:
> browsing the expression data from the gnf atlas2 my question arose:
> are the expression-Ids equal for human and mouse, i.e. do they refer to the same type of tissue?
> best regards!
> 
>        
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