[Genome] synteny map

Hiram Clawson hiram at soe.ucsc.edu
Mon Sep 17 10:07:05 PDT 2007


Good Morning Junjie:

Your attachment is not allowed through on the email list.
Were you looking for something such as the following:
	http://genome-test.cse.ucsc.edu/~hiram/Synteny/index.html

These pictures are made directly from the genome browser.  These
are the net tracks in dense mode from a full chromosome view.  Each chromosome
net track individually extracted from the genome browser and assembled
into these composite images.

Can you supply a URL reference to the item you mentioned you had attached ?

--Hiram

jlu at bio.fsu.edu wrote:
> Dear UCSC,
> 
> I did some study on synteny maps between species (human vs mouse) but 
> didn't find anything that can give something as simple as what I 
> attached here. The net/chain files are quite complicated and don't seems 
> to do this. Could you please give me some hint as to if this kind of 
> data is available or where to look for or how to compute them? thanks,
> 
> Best wishes,
> 
> Junjie


More information about the Genome mailing list