[Genome] phastcons_scores

Vlad Babenko bob at bionet.nsc.ru
Mon Sep 17 09:26:30 PDT 2007


    Greetings,
   First, thanks to UCSC developers for the work and assistance ;-)
     Next is a problem:
I didn't manage to coordinate hg18.phastcons tracks to that I may see in the browser. For example, it could be seen that the score =1 for the chr6 pos 26195725 (http://www.genome.ucsc.edu/cgi-bin/hgTracks?position=chr6:26195715-26195740&db=hg18&ss=../trash/hgSs/hgSs_www_221b_95c6a0.pslx+../trash/hgSs/hgSs_www_221b_95c6a0.fa&hgsid=92639599)

Still I may see that in file (http://hgdownload.cse.ucsc.edu/goldenPath/hg18/phastCons28way/vertebrate/chr6.pp.gz) it is, though close to local maxmum , but not 1: score=0.233.
     Are the conservation wiggles the processed versions of the phastcons ones, or I'm missing something? For the phastcons file mentioned above I started with the header offset 5001 and counted off the position.
     Thank you,
           Vlad


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