[Genome] Question regarding how to view GeneChip Mouse Tiling Arrays data using UCSC Genome Browser

[Kayla Smith]

Hello, ChinYi:

Yes, we have some Affymetrix data on the Genome Browser.   The data we 
have is on human, mouse, rat, zebrafish and drosophila.   We have both 
alignment tracks where we  align consensus sequences to the genome, and 
data tracks, which show actual experimental data in those regions.

An easy way to find Affymetrix tracks on our website is to open a 
browser and scroll down to the "Expression and Regulation" track controls.

To get you started, here is a session for human (hg18) with a few 
Affymetrix tracks turned on:

http://genome.cse.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=Kayla&hgS_otherUserSessionName=hg18%2Daffymlq

I hope this is helpful to you.  Please don't hesitate to contact us 
again if we can be of further assistance.

Kayla Smith
UCSC Genome Bioinformatics Group


Chu, ChinYi wrote:
> Hi!
> 
>  
> 
> Affymetrix technical support told me that I can use UCSC Genome Browser
> to view Affymetrix tiling array data. I went through the web site but I
> couldn't find a way to do it... could you please give me some hints?
> Thank you!
> 
>  
> 
> Sincerely,
> 
> Chin-Yi 
> 
>  
> 
> ------------------------------------------
> 
> Chin-Yi Chu
> 
> Bioinformatics Service
> 
> Functional Genomics Center
> 
> University of Rochester
> 
> 211 Bailey Road, Suite 1
> 
> West Henrietta, NY14586
> 
> Office: (585)276-9988
> 
> Functional Genomics Center: (585)427-9334
> 
> Email: chinyi_chu at urmc.rochester.edu
> <mailto:chinyi_chu at urmc.rochester.edu> 
> 
> URL: http://fgc.urmc.rochester.edu <http://fgc.urmc.rochester.edu> 
> 
> ------------------------------------------
> 
>  
> 
>  
> 
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
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