[Genome] Help!

[ZhengWenXin]

Dear Prof.,
       Would you please help me to resolve a problem about the conservation track of the UCSC genome browser?
       I’m interested in the conservation of the human genome with other species. As described in the Methods part, pairwise alignments with the human genome were generated for each species using blastz from repeat-masked genomic sequence. For example, how can I get the best alignment of the human genome and the mouse genome? If I use the blastz software to do it on a PC, how long it will take? Would you please give me an estimate? And I also want to know you hardware environment in which you perform the pairwise alignments. 
       Thank you very much! Your help will be greatly appreciated.
Best wishes,
WenXin Zheng
 
 
 
 
Wen-Xin Zheng, PhD candidate
Bioinformatics Center
Tianjin University
Tianjin 300072
China
Fax: +86-22-27402697
Website: http://tubic.tju.edu.cn
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