[Genome] Table browser output typo?
Sukhinder Sandhu
sukhinder.sandhu at osumc.edu
Thu Sep 6 05:55:39 PDT 2007
Hi
I was looking at the Table Schema of the following table at the table
browser and I got the output from which it seems one of the header values is
misplaced. Looks like 'exonCount' comes after 'exonStarts' and 'exonEnds',
but its listed otherwise.
TABLE browser options used:
Vertebrate->Human->Mar2006->Genes and Gene Prediction Tracks->UCSC
Genes->knownGene->chr2:239504713-239716637->all fields from selected table
OUTPUT
#name chrom strand txStart txEnd cdsStart cdsEnd
exonCount exonStarts exonEnds proteinID alignID
uc002vyj.1 chr2 - 239505934 239512902 239511019 239512311
10
239505934,239506360,239507120,239508015,239508242,239508628,239509705,239511
490,239512570,239512871,
239506149,239506480,239507213,239508109,239508504,239508971,239511023,239512
320,239512753,239512902, Q6ZUA0 uc002vyj.1
uc002vyk.1 chr2 - 239635318 239987580 239639729 239939331
27
239635318,239640092,239641381,239653354,239655121,239667727,239668734,239670
787,239674191,239676641,239681642,239689408,239694682,239698158,239701685,23
9713088,239720877,239721159,239726316,239731215,239743284,239750435,23976304
5,239776465,239823225,239939309,239987007,
239639769,239640234,239641466,239653488,239655240,239667825,239668854,239670
875,239674247,239676749,239681689,239689529,239694816,239698345,239701943,23
9713312,239721076,239721276,239726429,239731347,239743406,239750556,23976319
6,239776710,239823297,239939550,239987580, P56524 uc002vyk.1
Thanks
sukhinder
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