[Genome] Help on error of Galaxy submission

[Brooke Rhead]

Hello Jin,

This is probably an issue with Galaxy not being able to access your 
internal browser.  When you submit something to Galaxy using the Table 
Browser, it sends a URL to Galaxy (like ...hgTables?hgsid=%u), then 
Galaxy invokes the Table Browser with the cart settings associated with 
your session ID.  In this case, it sounds like Galaxy can't get to your 
internal Genome Browser.

One way you could get around this problem is to save your Table Browser 
results to a file (instead of checking the box to send it directly to 
Galaxy), and then upload that file to Galaxy.

I hope this helps explain what is happening.  If you have further 
questions, please do not hesitate to write back to this list.

--
Brooke Rhead
UCSC Genome Bioinformatics Group


Ma, Jin wrote:
> Browser helpers,
> 
> When I submit a BED format to Galaxy from the Table Browser using our
> internal browser, I got the following error 
> An error occurred running this job: It appears that the UCSC Table
> Browser is currently offline. You may try again later., 
> But when I use the public ucsc browser and follow the exactly same
> steps, the error never showed up. Could you give me some hints on what
> problem it might be? Thanks.
> 
> Jin
> 
> 
> 
> ------------------------------------------------------------------------------
> Notice:  This e-mail message, together with any attachments, contains
> information of Merck & Co., Inc. (One Merck Drive, Whitehouse Station,
> New Jersey, USA 08889), and/or its affiliates (which may be known
> outside the United States as Merck Frosst, Merck Sharp & Dohme or MSD
> and in Japan, as Banyu - direct contact information for affiliates is 
> available at http://www.merck.com/contact/contacts.html) that may be 
> confidential, proprietary copyrighted and/or legally privileged. It is 
> intended solely for the use of the individual or entity named on this 
> message. If you are not the intended recipient, and have received this 
> message in error, please notify us immediately by reply e-mail and then 
> delete it from your system.
> 
> ------------------------------------------------------------------------------
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome