[Genome] Conservated genes' GENEID
Shawn X Feng
drestion at gmail.com
Mon Oct 15 14:07:54 PDT 2007
Hi,
I am now looking for human genes that are highly conservated. I got a
file from the UCSC Table browser using the following configurations:
group: comparative genomics
track: most conserved
and what i got is :
#bin chrom chromStart chromEnd name score
1 chr1 25165819 25165859 lod=22 299
12 chr1 28311540 28311557 lod=14 244
12 chr1 29360117 29360136 lod=14 244
17 chr1 71303151 71303427 lod=462 674
Now what i need is to transform these data to the following format:
GENEID score
8815 188
1981 800
the geneid is the id system used by the Entrez gene system. Or it can
be uniprot ac number.
I will appreciate if someone can offer me some tips on how to utilize
UCSC in this way.
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