[Genome] human UTR sequence-gene name-probe_setID

[Ann Zweig]

Hello Alberto,

	I'm not completely clear about what you are trying to do.  I will give you a 
little bit of information and after you read it, if you still have questions, 
please feel free to write back to the list with a more detailed question.

	We have an annotation track on the latest human assembly (hg18) that contains 
microRNAs.  The track is called sno/miRNA.  The name of the underlying database 
table for this track is wgRna.  You can use the Table Browser ('Tables' from the 
top blue navigation bar) to mine data from this table.  If you wish to select 
only the microRNAs from the wgRna table using the Table Browser, choose to 
'filter' the table in this way:  type does match miRna

	You can also use the Table Browser to intersect data from one table with data 
from another table.  It appears that you may be interested in this.  For 
example, you could intersect the miRna's from the wgRna table with an Affy probe 
alignment track.  We have several such tables including: affyU133, affyHuEx1, 
affyGnf1h, etc.  You would need to decide for yourself which table is most 
appropriate for your needs.

	For help on using the Table Browser see this page: 
http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html

	Hopefully this will be enough information for you to get started on your task. 
  As I said, please feel free to write back to the list with more detailed 
questions.


Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu

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acorradin at dei.unipd.it wrote:
> Dear Sirs and Madams,
> I need to relate microRNAs data with gene expression data.
> I would like to relate UTR sequences with the gene names of their  
> entire sequences or Affymetrix probeset ID.
> Is it possible to do this?
> Thank you very much
> 
>                                       Alberto, Venice (ITALY)
> 
> 
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