[Genome] wigmaf-type in trackdb.ra

Maximilian Haeussler maximilianh at gmail.com
Thu Oct 11 10:06:30 PDT 2007


Dear gurus,

I've aligned C. intestinalis and C. savingyi some time ago and wrote a
how-to about it (
http://genomewiki.ucsc.edu/index.php/Whole_genome_alignment_howto).
Tried to do blastz/chain/netting/maffing and loaded the mafs into the
browser. The alignments look nice when I zoom to basepair resolution.

However, the wigmaf-track doesn't seem to be recognized as a maf-track: When
I click onto it, no alignments are displayed and the table browser doesn't
offer the "maf" format for download.
I have no clue where to search, can you give me a hint into the right
direction?

Example:
http://genome.ciona.cnrs-gif.fr/cgi-bin/hgTracks?hgt.out1=1.5x&position=chr10p%3A958170-959006

Thanks a lot in advance,
Max


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