[Genome] Known Genes in UCSC

[Kayla Smith]

Hello, Christian,

You can either download the whole table here:
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/knownGene.txt.gz

Or you can use the Table Browser to extract only the columns you are 
interested in.  Click on "Tables" on the blue bar on the top of the main 
page.  Then set the following settings:

clade: Vertebrate
genome: Human
assembly: Mar. 2006
group: Genes and Gene Prediction Tracks
track: UCSC Genes
table: knownGene
region: genome
output format "selected firelds from primary and related tables

click "get output"

Check the boxes next to the relevant columns, and click "get output" again.

I hope this is helpful to you.  Please don't hesitate to contact us 
again if you require further assistance.

Kayla Smith
UCSC Genome Bioinformatics Group



roedelsp at molgen.mpg.de wrote:
> Hello,
> 
> I'd like to retrieve the complete gene annotation for hg18 for UTRs, exon and
> introns of all known genes, including gene ID, chromosome, start, end and strand.
> I would be very glad if anyone could help me.
> 
> Thanks in advance
> 
> Christian Roedelsperger
> 
> 
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
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