November 2007 Archives by thread

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Starting: Thu Nov 1 08:33:47 PDT 2007
Ending: Fri Nov 30 19:01:57 PST 2007
Messages: 155

• [Genome] UCSC IDs   Rachael Huntley
  • [Genome] UCSC IDs   Kayla Smith
• [Genome] dbsnp 127   Ohlsen, Kari
  • [Genome] dbsnp 127   Kayla Smith
• [Genome] dbSNP(128)   Olivier Harismendy
  • [Genome] dbSNP(128)   Kayla Smith
• [Genome] OMIM number   Christy Chang
  • [Genome] OMIM number   Kayla Smith
• [Genome] Query about Unigene mapping data in UCSC   Brooke Rhead
• [Genome] mapping of zebrafish Compugen oligonucleotides   Julien Roux
  • [Genome] mapping of zebrafish Compugen oligonucleotides   Ann Zweig
• [Genome] Query regarding EST Blat Alignment results   Viswanath, Lalitha (NIH/NCI) [C]
  • [Genome] Query regarding EST Blat Alignment results   Ann Zweig
• [Genome] question about custom refseq track.   zxu
  • [Genome] question about custom refseq track.   Ann Zweig
    • [Genome] there might have some bug in your liftover batch program?   zxu
• [Genome] MM9 to MM8 Chain Files   Mitchell Guttman
  • [Genome] MM9 to MM8 Chain Files   Kayla Smith
• [Genome] Query about Genbank Accession to RefSeq Ids   Viswanath, Lalitha (NIH/NCI) [C]
  • [Genome] Query about Genbank Accession to RefSeq Ids   Brooke Rhead
• [Genome] refseq table question   Barb, Jennifer (NIH/CIT) [E]
  • [Genome] refseq table question   Brooke Rhead
    • [Genome] refseq table question   Barb, Jennifer (NIH/CIT) [E]
      • [Genome] refseq table question   Brooke Rhead
      • [Genome] refseq table question   Brooke Rhead
• [Genome] Intronic single-exon genes   Ryan Morin
  • [Genome] Intronic single-exon genes   Kayla Smith
• [Genome] Query about Ensembl Ids   Viswanath, Lalitha (NIH/NCI) [C]
  • [Genome] Query about Ensembl Ids   Archana Thakkapallayil
• [Genome] use liftOver to update SNP postions?   Yueming Ding
  • [Genome] use liftOver to update SNP postions?   Ann Zweig
• [Genome] PhastCons .pp.gz files appear corrupt on Windows XP   Clement Kent
  • [Genome] PhastCons .pp.gz files appear corrupt on Windows XP   Brooke Rhead
• [Genome] refGene and refSeqAli table dumps   Brian O'Connor
  • [Genome] refGene and refSeqAli table dumps   Brooke Rhead
• [Genome] looking for the table containing the exact information of a side by side   Brooke Rhead
• [Genome] known gene IDs (kgId) refer to wrong Ensembl transcript ID (ENST) in knownToEnsembl table   Paco Hulpiau
  • [Genome] known gene IDs (kgId) refer to wrong Ensembl transcript ID (ENST) in knownToEnsembl table   Kayla Smith
• [Genome] Precomputed TFBS for mouse   Diego Miranda
  • [Genome] Precomputed TFBS for mouse   Kayla Smith
    • [Genome] Precomputed TFBS for mouse   Diego Miranda
      • [Genome] Precomputed TFBS for mouse   Kayla Smith
• [Genome] track for duplication loci   Wistow, Graeme (NIH/NEI) [E]
• [Genome] BLAT problem   Elliott, Rosemary
  • [Genome] BLAT problem   Kayla Smith
  • [Genome] BLAT problem   Galt Barber
• [Genome] using the knownGene table   Donna Toleno
  • [Genome] using the knownGene table   Kayla Smith
• [Genome] track for duplication loci   Robert Kuhn
• [Genome] looking for the table containing the exact information of a side by side   Brooke Rhead
• [Genome] there might have some bug in your liftover batch program?   Ann Zweig
• [Genome] track on genome browser   SIKA ZHENG
  • [Genome] track on genome browser   Ann Zweig
• [Genome] liftOver using over.chain   Tay Sen Kwan
  • [Genome] liftOver using over.chain   Brooke Rhead
• [Genome] Question regarding visualization of NimbleGen ChIP-chip data   Christoph Bock
  • [Genome] Question regarding visualization of NimbleGen ChIP-chip data   Hiram Clawson
• [Genome] exon number for Entrez gene   Li Xiao
  • [Genome] exon number for Entrez gene   Ann Zweig
• [Genome] ERVWE1 human gene   Philippe DESSEN
  • [Genome] ERVWE1 human gene   Ann Zweig
• [Genome] problem with browser   John Fyfe
  • [Genome] problem with browser   Ann Zweig
• [Genome] ucsc test site   Einat Hazkani-Covo
  • [Genome] ucsc test site   Hiram Clawson
• [Genome] Citing the UCSC genome database/data in a web application.   Crabtree, Jonathan
  • [Genome] Citing the UCSC genome database/data in a web application.   Donna Karolchik
• [Genome] repetitive element names   nicole.leahy at jax.org
  • [Genome] repetitive element names   Brooke Rhead
    • [Genome] repetitive element names   Brooke Rhead
• [Genome] illumina 1M chip   Hebbring, Scott J.
  • [Genome] illumina 1M chip   Brooke Rhead
• [Genome] question about double records in refseq database   yael shemla
• [Genome] Convert to chr position numbers   Yu, Wei (CDC/CCHP/NOPHG)
  • [Genome] Convert to chr position numbers   Hiram Clawson
    • [Genome] Convert to chr position numbers   Yu, Wei (CDC/CCHP/NOPHG)
      • [Genome] Convert to chr position numbers   Kayla Smith
• [Genome] Query regarding mRNA Alignments provided by UCSC   Viswanath, Lalitha (NIH/NCI) [C]
  • [Genome] Query regarding mRNA Alignments provided by UCSC   Hiram Clawson
• [Genome] problem with browser   Robert Kuhn
• [Genome] Testing multiple oligoes in in-silico PCR   Archana Thakkapallayil
• [Genome] diference between manual and displayed BLAT mapping   Brooke Rhead
• [Genome] How to randomly access the compressed quality score file   Xueya Zhou
  • [Genome] How to randomly access the compressed quality score file   Hiram Clawson
• [Genome] From Uniprot ids to Ensembl ids   Chrisanthi Ainali
  • [Genome] From Uniprot ids to Ensembl ids   Kayla Smith
• [Genome] exons numbered   Rodney Perry, Ph.D.
  • [Genome] exons numbered   Kayla Smith
    • [Genome] exons numbered   Donna Karolchik
• [Genome] knownGene.txt question   Dmitriy Skvortsov
  • [Genome] knownGene.txt question   Archana Thakkapallayil
• [Genome] regarding conservation values download   Arvind
  • [Genome] regarding conservation values download   Archana Thakkapallayil
• [Genome] Designing a custom track using marker names instead of positions   S.Bos at lumc.nl
  • [Genome] Designing a custom track using marker names instead of positions   Archana Thakkapallayil
• [Genome] Yeast coordinates in SGD vs UCSC   Tommy Kaplan
  • [Genome] Yeast coordinates in SGD vs UCSC   Archana Thakkapallayil
• [Genome] difference of local Blat and web-Blat   Archana Thakkapallayil
  • [Genome] difference of local Blat and web-Blat   Dong Xianjun
    • [Genome] difference of local Blat and web-Blat   Hiram Clawson
      • [Genome] difference of local Blat and web-Blat   Xianjun Dong
    • [Genome] difference of local Blat and web-Blat   Galt Barber
• [Genome] Chimp sequence   Kevin Viel
  • [Genome] Chimp sequence   Archana Thakkapallayil
• [Genome] regarding UCSC gene table (for Human)   Vinay Kumar Mittal
  • [Genome] regarding UCSC gene table (for Human)   Brooke Rhead
• [Genome] problem on mouse genome for promoter region prediction   xu_jianzhen
  • [Genome] problem on mouse genome for promoter region prediction   Brooke Rhead
    • [Genome] problem on mouse genome for promoter region prediction   Brooke Rhead
• [Genome] Table Browser: how to join overlapped fragments   Vladimir Kuryshev
  • [Genome] Table Browser: how to join overlapped fragments   Kayla Smith
• [Genome] Help on loading GFF files   Ma, Jin
  • [Genome] Help on loading GFF files   Brooke Rhead
• [Genome] mapping/homology search method   Vladimir Kuryshev
  • [Genome] mapping/homology search method   Brooke Rhead
• [Genome] Missing ctgPos.txt.gz for rn4   Xiaomin Ying
  • [Genome] Missing ctgPos.txt.gz for rn4   Brooke Rhead
• [Genome] knownGene.txt question   Robert Kuhn
• [Genome] unknown bases   Maria Astrom
  • [Genome] unknown bases   Hiram Clawson
• [Genome] Question on updating genomic information from old version   Qu Zhang
  • [Genome] Question on updating genomic information from old version   Kayla Smith
• [Genome] question about downloaded tfbsCons data   Yan Xiang
  • [Genome] question about downloaded tfbsCons data   Kayla Smith
• [Genome] Repeat Elements   S J
  • [Genome] Repeat Elements   Archana Thakkapallayil
• [Genome] bug report   0570023
  • [Genome] bug report   Archana Thakkapallayil
• [Genome] transform hg18 postions to mouse genome   Weike Mo
  • [Genome] transform hg18 postions to mouse genome   Archana Thakkapallayil
• [Genome] hg18 hgPCR: can't find an amplicon   Pierre LINDENBAUM
  • [Genome] hg18 hgPCR: can't find an amplicon   Archana Thakkapallayil
• [Genome] Sense/Antisense   McCarthy, Kateri (NIH/NICHD) [F]
  • [Genome] Sense/Antisense   Archana Thakkapallayil
• [Genome] trouble mapping BAC clone   Andrew Yee
  • [Genome] trouble mapping BAC clone   Archana Thakkapallayil
    • [Genome] trouble mapping BAC clone   Andrew Yee
• [Genome] blat database   Archana Thakkapallayil
• [Genome] pictar and mircoRNA predictor tracks   Alistair Chalk
  • [Genome] pictar and mircoRNA predictor tracks   Brooke Rhead
• [Genome] genePred file   Esteban Czwan
  • [Genome] genePred file   Brooke Rhead
• [Genome] non-redundant list of genes   Katie Rudd
  • [Genome] non-redundant list of genes   Brooke Rhead
• [Genome] new SNPs in coding regions - synonymous or nonsynonymous?   Babak, Tomas
  • [Genome] new SNPs in coding regions - synonymous or nonsynonymous?   Brooke Rhead
• [Genome] Creating custom track similar to Affy all exon   Michiel van Galen
  • [Genome] Creating custom track similar to Affy all exon   Kayla Smith
• [Genome] Ensembl genes update   Giulietta Spudich
  • [Genome] Ensembl genes update   Kayla Smith
• [Genome] a question about rmsk table   Xiaolu.Huang at UCHSC.edu
  • [Genome] a question about rmsk table   Kayla Smith
• [Genome] problem on mouse genome for promoter region prediction   Brooke Rhead
• [Genome] anything can I do with mm5 data?   Weike Mo
• [Genome] Annotated transciption start sites   Raga Krishnakumar

Last message date: Fri Nov 30 19:01:57 PST 2007
Archived on: Sun Dec 2 01:38:33 PST 2007

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