[Genome] regarding UCSC gene table (for Human)

[Brooke Rhead]

Hello Vinay,

The UCSC Genes track on the human, March 2006 (hg18) assembly does 
include non-coding genes (as opposed to the older "Known Genes" track, 
which did not).  Note that there is not a UCSC Genes track on older 
human assemblies.

There is another track that you might want to use called "RNA Genes" 
that contains non-protein coding RNA genes and pseudogenes.

Here is a previously-answered question that describes how to filter 
these tracks using the Table Browser:

http://www.soe.ucsc.edu/pipermail/genome/2007-October/014924.html

I hope this is helpful.  If you have further questions, please feel free 
to write back to this mailing list.

--
Brooke Rhead
UCSC Genome Bioinformatics Group


Vinay Kumar Mittal wrote:
> Hi,
> 
> I want to know if genes included in UCSC gene table (for Human) also includes
> genes encoding for r-RNA, t-RNA or sn-RNA? OR the are exclusively only in the
> repeat masker result table.
> 
> Thanks
> 
> --
> Vinay Kumar Mittal,
> School of Biology,
> GTID: 902416858
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
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