[Genome] problem with browser

[Robert Kuhn]

Hello, John,

Your question prompted us to do a bit of investigation and we
discovered that the dog alignments had not actually been updated
as recently as those of the other organisms.  The situation has
been rectivied and the dog is once again being updated on a nightly
basis.

Thank you for bringing this to our attention.  We are sorry for any
difficulty the situation may have caused.

best wishes,

			--b0b kuhn
			ucsc genome bioinformatics group


> From genome at soe.ucsc.edu  Tue Nov 13 09:51:23 2007
> To: John Fyfe <fyfe at cvm.msu.edu>
> Cc: genome at soe.ucsc.edu
> Subject: Re: [Genome] problem with browser
> 
> Hello John,
> 
> 	We just did a big update to all GenBank-related tracks in the dog (and other) 
> assemblies.  My suspicion is that you have had that browser window open for a 
> long time and there is some old information cached which is clashing with the 
> new information.  My suggestion is for you to reset your cart.  You can do that 
> by visiting the gateway page and pressing "Click here to reset the browser user 
> interface settings to their defaults", or by visiting this URL: 
> http://genome.ucsc.edu/cgi-bin/cartReset
> 
> 	Please be sure to let us know if this does not immediately fix the problem.
> 
> 
> Regards,
> 
> ----------
> Ann Zweig
> UCSC Genome Bioinformatics Group
> http://genome.ucsc.edu
> 
> Please feel free to search the Genome mailing list archives by visiting our home 
> page, clicking on "Contact Us", then typing a word or phrase into the search 
> box.  On that same page
> (http://genome.ucsc.edu/contacts.html), you can subscribe to the Genome mailing 
> list.
> 
> 
> 
> 
> 
> John Fyfe wrote:
> > When we try to open any chr8 area from the dog (2005 assembly), we get teh following error: 
> > External file /gbdb/genbank/./data/processed/genbank.160.0/full/mrna.fa cannot be opened or has wrong size. Old size 1882991161, new size -1, error No such file or directory
> > 
> > 
> > What to do? 
> > 
> > John C. Fyfe, D.V.M., Ph.D.
> > Associate Professor of Microbiology 
> >      and Molecular Genetics
> > 
> > Laboratory of Comparative Medical Genetics
> > 2209 Biomedical Physical Sciences
> > Michigan State University
> > East Lansing, MI 48824-4320
> > 
> > Voice: (517) 355-6463 ext 1559
> > Fax:    (517) 353-8957
> > Email:  fyfe at cvm.msu.edu
> > http://www.mmg.msu.edu/faculty/fyfe.htm
> > 
> > 
> > _______________________________________________
> > Genome maillist  -  Genome at soe.ucsc.edu
> > http://www.soe.ucsc.edu/mailman/listinfo/genome
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome
>