[Genome] Question regarding visualization of NimbleGen ChIP-chip data

[Christoph Bock]

Hello,

I was wondering how NimbleGen ChIP-chip data should best be imported into
the UCSC Genome Browser, for visualization and analysis. The very simple
approach - uploading the GFF files from the NimbleGen DVDs as custom tracks
- doesn't really produce the desired result (it just displays the oligomer
positions rather than their values).

I'm sure that you performed this task a hundred times during the ENCODE
project, and I'd be grateful if you could give me a quick hint or even a set
of scripts that help me prepare the standard NimbleGen DVD data (pair format
or GFF format) for visualization in UCSC Genome Browser.

Thanks in advance!
 Christoph