[Genome] there might have some bug in your liftover batch program?

[zxu]

hi,

might have some bug in your liftover batch program?
I am trying to conver 2004 Human version to 2006 Human version. when convert
chr11:1-1000000, it give back result chr11:50001-1000000, missing 50000 bp. for
all other conversion, it seems OK.

zd
TWRI
UHN, U of toronto

Ann Zweig wrote:

> Hello zxu,
>
>         It is possible to do what you are suggesting by making a Custom Track
> from the refSeq track.  When you do this, you can limit the genes you
> would like to display in your track.
>
>         If you have never made a Custom Track using the Table Browser, you can
> read about it here: http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html
>
>         Configure the Table Browser by choosing the refSeq table.  Then enter
> your list of genes into the 'identifiers (names/accessions): "paste
> list"' (e.g. DUSP22 IRF4).  Choose "custom track" as your output format.
>   Then follow the prompts to view your newly-created Custom Track in the
> Genome Browser.
>
>         I hope this information is helpful to you.  Please don't hesitate to
> contact the mail list again if you require further assistance.
>
> Regards,
>
> ----------
> Ann Zweig
> UCSC Genome Bioinformatics Group
> http://genome.ucsc.edu
>
> Please feel free to search the Genome mailing list archives by visiting
> our home page, clicking on "Contact Us", then typing a word or phrase
> into the search box.  On that same page
> (http://genome.ucsc.edu/contacts.html), you can subscribe to the Genome
> mailing list.
>
> zxu wrote:
> > I had a question about how to customize refseq track?  bacically, I want
> > to show certain refseq within certain chromosome  but not all of them?
> > let's say in chr6:200000-1000000, there are gene DUSP22, IRF4, EXOC2,
> > HUS1B.  but I want to only show DUSP22, IRF4, not the other two genes.
> > since  DUSP22, IRF4 are realted to IFN pathway, let's say?
> >
> > Best regrads
> >
> > zd
> >
> >
> >
> >
> > _______________________________________________
> > Genome maillist  -  Genome at soe.ucsc.edu
> > http://www.soe.ucsc.edu/mailman/listinfo/genome