[Genome] Intronic single-exon genes

[Kayla Smith]

Hello Ryan,

To get this set of genes, you'll need to make three Custom Tracks:

1.  hg18.knownGenes filtered with exonCount=1
2.  the introns of hg18.knownGenes

3.  Make a third custom track by intersecting the CT of knownGene with 
exonCount=1 with the CT of knownGene introns.

For your convenience, here is a session containing the three custom 
tracks described above:

http://genome.cse.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=Kayla&hgS_otherUserSessionName=kayla%2DkgIntrons

I hope this information is helpful to you.  Please don't hesitate to 
contact us again if you require further assistance.

Kayla Smith
UCSC Genome Bioinformatics Group


Ryan Morin wrote:
> I am trying to get a list of all the genes (ensembl or known genes)  
> that meet the following criteria:
> 
> 1) have only a single exon
> 
> 2) reside within the intron of another gene (on either the same or  
> opposing strand)
> 
> Does anyone know if this is possible using the table browser?
> 
> Thanks,
> 
> Ryan
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome