[Genome] Grp.sql file

[Hiram Clawson]

Good Afternoon Archie:

Please note the discussion about this alpha target and this cvs situation in:
	src/product/README.trackDb

Comment out the line that does the CVS by setting
CVS = echo

At the top of the trackDb/makefile

--Hiram

Russell, Archie wrote:
> Hi Hiram
> 
> Following the instructions I added a line for my genome into the DBS
> variable,  but "make alpha" doesn't seem to work (I get an error about
> cvs not found).
> 
> Can I just copy the trackDb.ra files from other species into my new
> assembly directory and run hgTrackDb, or is make alpha doing something
> more complicated?
> 
> Thanks,
> Archie 
> 
> -----Original Message-----
> From: Hiram Clawson [mailto:hiram at soe.ucsc.edu] 
> Sent: Thursday, May 31, 2007 1:55 PM
> To: Russell, Archie
> Cc: genome at soe.ucsc.edu
> Subject: Re: [Genome] Grp.sql file
> 
> The groups won't begin to show up until there are tracks in them.
> The couple of extra rows are harmless.
> 
> --Hiram
> 
> Russell, Archie wrote:
>> Thanks Hiram.
>>
>> If I'm going to only have a couple of tracks, I guess I should remove
>> most of the rows from this table?
>>
>> -Archie
>>
>> -----Original Message-----
>> From: Hiram Clawson [mailto:hiram at soe.ucsc.edu] 
>> Sent: Thursday, May 31, 2007 12:00 PM
>> To: Russell, Archie
>> Cc: genome at soe.ucsc.edu; genome-mirror at soe.ucsc.edu
>> Subject: Re: [Genome] Grp.sql file
>>
>> Good Morning Archie:
>>
>> This is simply a copy from any currently existing database.
>> You can pick up this definition from any database in
>> hgdownload, for example:
>> 	ftp://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/grp.sql
>>
>> Or, from a copy in your current hg18 database locally:
>> hgsql -e "create table grp (PRIMARY KEY(NAME)) select * from
>> myNewDb.grp" hg18
>>
>> It is pretty much identical in every database.  Some instances of it
>> will have
>> Encode groups, as on hg17 for example.
>>
>> --Hiram
>>
>> Russell, Archie wrote:
>>> http://genome.ucsc.edu/FAQ/FAQlicense#license4
>>>
>>> Hi,
>>>
>>> I'm trying to follow the instructions for adding a new assembly,
> there
>>> is a file called "grp.sql" mentioned on that site.  Where can I find
>>> that file?
>>>
>>> Thanks,
>>> Archie
>>
>>
>>
>>
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