[Genome] cDNA blocks/UTR

[Ann Zweig]

Hello Alison,

	This feature of the Browser did not change.  Here's how to find that display:

- locate your refSeq Gene of interest.
- click on it to go to the details page about that gene.
- click on the link under this label "mRNA/Genomic Alignments".

This will take you to the genomic alignment where:
"Matching bases in coding regions of cDNA and genomic sequences are colored blue 
and capitalized. Matching bases in UTR regions of cDNA and genomic sequences are 
colored red and capitalized. Light blue (coding) or orange (UTR) bases mark the 
boundaries of gaps in either sequence (often splice sites)."

	Please let us know if you're still having difficulty.

Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu

We invite you to give us your feedback on the UCSC Genome Browser
through May 31, 2007: http://www.surveymonkey.com/s.asp?U=881163743177

Please feel free to search the Genome mailing list archives by visiting
our home page, clicking on "Contact Us", then typing a word or phrase
into the search box.  On that same page
(http://genome.ucsc.edu/contacts.html), you can subscribe to the Genome
mailing list.


alison korte wrote:
> Hi,
> 
> Did features of the Genome Browser change? Or could
> this be something about the set up of this new
> computer? Or maybe I'm being stupid...
> 
> I cannot find where to view a cDNA sequence in the Red
> & Blue color-coded system for exon blocks vs. UTR.
> This was a tremendously helpful link that I can no
> longer find.
> 
> Please help. Thanks.
> Alison
> UCSC alumna now at UT Southwestern
> 
> 
> 
> 
> 
> 
> 
>        
> ____________________________________________________________________________________Looking for a deal? Find great prices on flights and hotels with Yahoo! FareChase.
> http://farechase.yahoo.com/
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome