[Genome] I need help with genome

[Rachel Harte]

Khaled,

Unfortunately, we do not work with viral genomes. I recommend that you try
a literature search to find the latest programs to use for creating viral
genome multiple alignments and phylogenetic trees. Some standard programs
are:

Multiple alignemnts:
ClustalW - http://www.ebi.ac.uk/clustalw/
The program can also be downloaded via link from this site.
MAFFT - http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/
T-Coffee - http://www.ebi.ac.uk/t-coffee/
and others: http://pbil.univ-lyon1.fr/alignment.html

Phylogenetic trees:
Phylip
PAUP
and other programs -
http://evolution.genetics.washington.edu/phylip/software.html

I hope that this helps you.

Rachel

Rachel Harte
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu


On Thu, 10 May 2007, Khaled Mhgoob wrote:

> Hi , my name is Vet/ Khaled Mahgoup from Egypt I prepare my PHD degree in poultry disease my work concern by IBV virus .I made a sequence of the S1 gene of my virus (4 Isolates) I need to make phylogenic tree and Nucleotide identities % table of my isolates . I red in paper published in virology journal about use soft ware from site www.genome.ip so pleases I need help.
> Can I send the sequence and you send me the phylogenic tree and table of Nucleotide identities ,I have the panel of viruses I want to match with and the Gene Bank accession numbers OR you allow me to use your web
> Please send me at my mail khaled_mhgoob at yahoo.com
> Thank for help
> Khaled
>
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