[Genome] Encode and dbSNP

[Kayla Smith]

Sang Chul,

On the human (hg17) assembly there is a track called "HapMap SNPs".  It 
is in the "ENCODE Variation" section.  This is a composite track, with 4 
tables that look like "encodeHapMapAlleleFreq%", where % is {CEU, CHB, 
JPT, YRI}.  These tables are available for download from 
http://hgdownload.cse.ucsc.edu/goldenPath/hg17/database/

I hope this data is helpful to you.  Please don't hesitate to contact us 
again if you require further assistance.

Kayla Smith
UCSC Genome Bioinformatic Group



Sang Chul Choi wrote:
> Hi,
> 
> I have a question about ENCODE data in the genome browser. I want to
> get SNPs with dbSNP rsID only generated by ENCODE project. Is there
> any Table for this in UCSC genome browser?
> 
> Thank you,
> 
> Sang Chul
>