[Genome] <no subject>

[Archana Thakkapallayil]

Hello Adrienne,

You could get this information using the Table Browser. To get to this 
make the following selections in the Table Browser:

clade: vertebrate
genome: human
assembly: Mar. 2006
group: Genes and Gene Prediction Tracks
track: UCSC Genes
table: kgXref
click on "filter: create" button and then paste your gene name into the 
geneSymbol text box.( If you have a list of genes you can paste the 
white-space separated list of gene names into the geneSymbol text box ) 
then click "submit" .
Set output format: "selected fields from primary and related tables", 
then click "get output". Then select the field 'kgId' and hit "get output".

This gives you the ucsc id's for all the isoforms for your gene of 
interest. You could then use the Table Browser on 'knownGene' table and 
then paste or upload your list of known gene id's using the paste/upload 
list feature. You can then choose 'sequence' as output format. This 
gives you the sequence for each isoform.

I hope this information is helpful to you. Please let us know if you 
have further questions.

Regards,

Archana
UCSC genome Bioinformatics Group



Jones, Adrienne wrote:
> Hello,
>
> How can I view all of the nucleotide sequence showing all of the
> alternatively spliced isoforms for a given gene?
>
> Thank you for your time and help.
>
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome
>