[Genome] link for custom track does not work

Hiram Clawson hiram at soe.ucsc.edu
Fri May 4 10:14:44 PDT 2007


Good Morning Diana:

The reason the browser opens to the entire chr21 is because
you have the line:
browser position chr21

at the top of your data file.  This position specification
overrides the position specification you have in your URL.

Either eliminate this data line from your file, or set it
to be the position you want this data to start out on in
the browser.

--Hiram

diana santacruz wrote:
> Hello UCSC-Browser:
> 
> I have a list of data that I want to visualize int he genome browser.
> For each item of the list (gene) I would like to have a direct link
> that shows the exact position along with my custom tracks.
> 
> For this I made a test with the following link:
> 
> http://genome.ucsc.edu/cgi-bin/hgTracks?org=human&db=hg17&position=chr21:13000000-14000000&hgt.customText=http://www.uni-saarland.de/fak8/genetik/rawdata/2007_02_20_poster_exam.bed
> 
> It takes a bit to open and when it does it shows the whole chromosome
> 21 rather than the specified position.
> 
> Could you please tell me if I have done something wrong and why it is
> not working?
> 
> Thank you very much.


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