[Genome] [Fwd: extracting human genes from mouse expression arrays]

[Zhaodong Xu]

hi,

my collegue want to extract the accession data from the mouse data and
convert them to human accession numbers, what kind of Table should I
query to?

thanks


zhaodong

-------- Original Message --------
Subject: extracting human genes from mouse expression arrays
Date: Mon, 30 Apr 2007 16:21:26 -0400
From: izhar livnebar <i.livne at utoronto.ca>
To: zxu at uhnres.utoronto.ca

Hello Zhadong, Rod wants me to generate heat maps from the expression  
array of retinoblastoma samples. the heat maps should be of functional  
groups that are active in the retina (Cell cycle, RNA metabolism  
etc.). Can you find a way to extract the accession data for these  
groups from the mouse papers below and convert them to human accession  
numbers so I can import it into the my array analysis ?
thanks, Izzy

Samuel Shao-Min Zhang,1,5 Xuming Xu,1 Mu-Gen Liu,1 Hongyu Zhao,2  
Marcelo Bento Soares,3 Colin J Barnstable,1,5 and Xin-Yuan Fu4
BMC Dev Biol. 2006; 6: 48.
A biphasic pattern of gene expression during mouse retina development

Blackshaw S, Fraioli RE, Furukawa T, Cepko CL. Comprehensive analysis  
of photoreceptor gene expression and the identification of candidate  
retinal disease genes. Cell. 2001;107:579?589. doi:  
10.1016/S0092-8674(01)00574-8. [PubMed]

Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, Weber G,  
Lee K, Fraioli RE, Cho SH, et al. Genomic analysis of mouse retinal  
development. PLoS Biol. 2004;2:E247. doi:  
10.1371/journal.pbio.0020247. [PubMed]
Zhaodong Xu <zxu at uhnres.utoronto.ca>, Zuyao <zni at uhnres.utoronto.ca>