March 2007 Archives by thread

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...

Starting: Thu Mar 1 07:50:05 PST 2007
Ending: Sat Mar 31 10:14:18 PST 2007
Messages: 227

• [Genome] Obtaining images   Nodin Weddington
  • [Genome] Obtaining images   Ann Zweig
• [Genome] CCDS protein sequences   Jittima Piriyapongsa
  • [Genome] CCDS protein sequences   Ann Zweig
• [Genome] how to find a snp on zebra fish...   Sridhar Prathikanti
  • [Genome] how to find a snp on zebra fish...   Ann Zweig
• [Genome] Pfam foreign keys in data tables // mapping protein domains to genomic coordinates   John Major
  • [Genome] Pfam foreign keys in data tables // mapping protein domains to genomic coordinates   Ann Zweig
    • [Genome] Pfam foreign keys in data tables // mapping protein domains to genomic coordinates   John Major
      • [Genome] Pfam foreign keys in data tables // mapping protein domains to genomic coordinates   Fan Hsu
      • [Genome] Pfam foreign keys in data tables // mapping protein domains to genomic coordinates   John Major
• [Genome] RefLink table   Alfredo Hidalgo Miranda
  • [Genome] RefLink table   Ann Zweig
• [Genome] BLAT match, score, percentage - how to select best alignment   Brooke Rhead
• [Genome] SQL query hg17   Andrew Eckert
• [Genome] (no subject)   Spivakov, Mikhail
  • [Genome] (no subject)   Ann Zweig
• [Genome] Problems with Human May 2004 Browser   Gonzales, Patrick R.
  • [Genome] Problems with Human May 2004 Browser   Ann Zweig
• [Genome] genome browser local copy question   Ross Lazarus
  • [Genome] genome browser local copy question   Ann Zweig
• [Genome] Relationship between 'phastCons17way' and 'phastConsElements17way'?   Gordon Robertson
  • [Genome] Relationship between 'phastCons17way' and 'phastConsElements17way'?   Ann Zweig
    • [Genome] Relationship between 'phastCons17way' and 'phastConsElements17way'?   Gordon Robertson
• [Genome] Chicken Genome   Ann Zweig
• [Genome] Access of annotation for GenBank and RefSeq genes   Bushel, Pierre (NIH/NIEHS) [E]
  • [Genome] Access of annotation for GenBank and RefSeq genes   Ann Zweig
    • [Genome] Access of annotation for GenBank and RefSeq genes   Bushel, Pierre (NIH/NIEHS) [E]
• [Genome] func column in snp126 table   Amit Indap
  • [Genome] func column in snp126 table   Ann Zweig
    • [Genome] func column in snp126 table   Heather Trumbower
• [Genome] problem with primers   Colin Sieff
• [Genome] Sequence of Hapmap-Encode project   gatzmon at aecom.yu.edu
  • [Genome] Sequence of Hapmap-Encode project   Heather Trumbower
• [Genome] (no subject)   JONATHAN COOPER
  • [Genome] (no subject)   Brooke Rhead
• [Genome] honey bee genome   Yannick Wurm
  • [Genome] honey bee genome   Brooke Rhead
• [Genome] How to get gene names in a batch given accession IDs of mRNA or EST?   Long Li
  • [Genome] How to get gene names in a batch given accession IDs of mRNA or EST?   Brooke Rhead
• [Genome] SNP Function   Jasmin Roohi
  • [Genome] SNP Function   Heather Trumbower
• [Genome] MySQL database of the genome browser   Bushel, Pierre (NIH/NIEHS) [E]
  • [Genome] MySQL database of the genome browser   Brooke Rhead
    • [Genome] MySQL database of the genome browser   Bushel, Pierre (NIH/NIEHS) [E]
      • [Genome] MySQL database of the genome browser   Hiram Clawson
      • [Genome] MySQL database of the genome browser   Bushel, Pierre (NIH/NIEHS) [E]
      • [Genome] Queyring the repeat tables in dm2 mysql database   Cook, Malcolm
      • [Genome] Queyring the repeat tables in dm2 mysql database   Kayla Smith
• [Genome] liftOver over.chain for rat   Benoit Ballester
  • [Genome] liftOver over.chain for rat   Kayla Smith
• [Genome] smaller size of mm8 vs hg18 all chain data from genome browser   Yiming Zhou
  • [Genome] smaller size of mm8 vs hg18 all chain data from genome browser   Brooke Rhead
• [Genome] location query   Wayne Yu
  • [Genome] location query   Kayla Smith
• [Genome] Question?   Luis Barreiro
  • [Genome] Question?   Kayla Smith
• [Genome] help interpret PCR results   Brooke Rhead
• [Genome] potential discrepancy between genome browser and hg18.mm8.all.chain   Brooke Rhead
• [Genome] Finding gene information from command line   Cory Y. McLean
  • [Genome] Finding gene information from command line   Brooke Rhead
    • [Genome] Finding gene information from command line   Brooke Rhead
• [Genome] Download first intron sequences   Montemayor, Celina
  • [Genome] Download first intron sequences   Brooke Rhead
• [Genome] differences between MAF and 2bit   Pavel Sumazin
  • [Genome] differences between MAF and 2bit   Brooke Rhead
• [Genome] question about BLAT   Jasmin Roohi
  • [Genome] question about BLAT   Brooke Rhead
• [Genome] Not the same assemblies in the browser and in the downloadable sequence files ?   Herve Seitz
  • [Genome] Not the same assemblies in the browser and in the downloadable sequence files ?   Brooke Rhead
• [Genome] Recombination Rate Track   Erika
  • [Genome] Recombination Rate Track   Ann Zweig
• [Genome] HapMap SNPs   Kari Ohlsen
  • [Genome] HapMap SNPs   Heather Trumbower
• [Genome] in-silco PCR   Demetra Stamm
  • [Genome] in-silco PCR   Ann Zweig
• [Genome] dbsnp 127   dmitriy
  • [Genome] dbsnp 127   Heather Trumbower
• [Genome] dbsnp 127   Heather Trumbower
• [Genome] Multiple alignments with Chimp 6x sequence?   Scott Doniger
  • [Genome] Multiple alignments with Chimp 6x sequence?   Archana Thakkapallayil
• [Genome] SOD1 gene and its 5' upstream sequence   Sue Copland
• [Genome] A problem with the soft-masking!   wang xiaosong
• [Genome] get the sequnence by using an Ensembl gene ID   Yu Zhou
  • [Genome] get the sequnence by using an Ensembl gene ID   Archana Thakkapallayil
• [Genome] UCSC In-Silico PCR   Kasper Thorsen
  • [Genome] UCSC In-Silico PCR   Archana Thakkapallayil
    • [Genome] the coordinates of annotated genes in hg18   Jun Wang
      • [Genome] the coordinates of annotated genes in hg18   Kayla Smith
• [Genome] SOD1 gene and its 5' upstream sequence   Sue Copland
  • [Genome] SOD1 gene and its 5' upstream sequence   Archana Thakkapallayil
• [Genome] apparent contradiction in genome graphs   Stanescu, Horia (NIH/NHGRI) [F]
  • [Genome] apparent contradiction in genome graphs   Ann Zweig
• [Genome] A problem with the soft-masking!   wang xiaosong
  • [Genome] A problem with the soft-masking!   Galt Barber
    • [Genome] A problem with the soft-masking!   Xiaosong Wang
• [Genome] Genome Digest, Vol 50, Issue 15   BIJU JOSEPH
• [Genome] I want an RS # for a specific snp   Levine, Joan
  • [Genome] I want an RS # for a specific snp   Heather Trumbower
• [Genome] protein ID / align ID   Anton Kratz
  • [Genome] protein ID / align ID   Fan Hsu
• [Genome] A problem with the soft-masking!   Galt Barber
  • [Genome] A problem with the soft-masking!   Xiaosong Wang
• [Genome] SNP help please?   Lorna Houlihan
  • [Genome] SNP help please?   Heather Trumbower
• [Genome] question re EST strand   Asaf Levy
  • [Genome] question re EST strand   Brooke Rhead
• [Genome] Centromere   Qin, Chunhua
  • [Genome] Centromere   Brooke Rhead
• [Genome] Table Browser Identifiers list problem   Spivakov, Mikhail
  • [Genome] FW: Table Browser Identifiers list problem   Spivakov, Mikhail
    • [Genome] FW: Table Browser Identifiers list problem   Brooke Rhead
  • [Genome] Table Browser Identifiers list problem   Brooke Rhead
• [Genome] FW: Table Browser Identifiers list problem   Robert Kuhn
• [Genome] A problem with the soft-masking!   Galt Barber
  • [Genome] A problem with the soft-masking!   Xiaosong Wang
• [Genome] A problem with the soft-masking!   Galt Barber
• [Genome] BLAT output format   Morgane THOMAS-CHOLLIER
  • [Genome] BLAT output format   Rachel Harte
• [Genome] Qs and comments about Table Browser and running Blat locally   Iris Vargas Jentzsch
• [Genome] liftOver chain files   Klaus Hornischer
  • [Genome] liftOver chain files   Rachel Harte
• [Genome] knownToU133   Jeffrey Rosenfeld
  • [Genome] knownToU133   Rachel Harte
• [Genome] Lift Genome Annotations: mm3 2 mm6   Rachel Harte
• [Genome] Lift Genome Annotations: mm3 2 mm6 (fwd)   Rachel Harte
• [Genome] Refarding 0 and 1 based notation of internal files   shaik rafi
  • [Genome] Refarding 0 and 1 based notation of internal files   Ann Zweig
• [Genome] Query   Narasimha Rao Marella
  • [Genome] Query   Ann Zweig
• [Genome] question   Detera-Wadleigh, Sevilla (NIH/NIMH) [E]
  • [Genome] question   Ann Zweig
• [Genome] latest cow genome on browser   Michael Dickens
  • [Genome] latest cow genome on browser   Heather Trumbower
• [Genome] zebrafish genes   shahar alon
• [Genome] WIG file - BED format load problem   Gordon Robertson
• [Genome] problem loading a BED-formatted WIG file   Gordon Robertson
  • [Genome] problem loading a BED-formatted WIG file   Hiram Clawson
    • [Genome] problem loading a BED-formatted WIG file   Gordon Robertson
• [Genome] human-chimp divergence   Patrick Evans
  • [Genome] human-chimp divergence   Archana Thakkapallayil
• [Genome] question   michael d. badzioch
  • [Genome] question   Archana Thakkapallayil
• [Genome] zebrafish genes   Rachel Harte
• [Genome] problem loading a BED-formatted WIG file   Hiram Clawson
  • [Genome] problem loading a BED-formatted WIG file   Gordon Robertson
• [Genome] Chicken assembly vs. build   Ryan Basom
• [Genome] mouse genes to human genes   Richard Wang
  • [Genome] mouse genes to human genes   Archana Thakkapallayil
• [Genome] Chicken assembly vs. build   Robert Kuhn
• [Genome] HUGO gene symbols   Deepak Grover
  • [Genome] HUGO gene symbols   Fan Hsu
  • [Genome] HUGO gene symbols   Archana Thakkapallayil
• [Genome] how to identify transcription factors   Irfan Qureshi
  • [Genome] how to identify transcription factors   Archana Thakkapallayil
  • [Genome] how to identify transcription factors   Archana Thakkapallayil
• [Genome] MAF alignments - non-orthologous regions   Daniel Gaffney
  • [Genome] MAF alignments - non-orthologous regions   Kate Rosenbloom
• [Genome] Table browser question   Joan Burnside
  • [Genome] Table browser question   Kayla Smith
• [Genome] Session problem?   Benjamin Berman
  • [Genome] Session problem?   Kayla Smith
• [Genome] maf files   Emmanuel Buschiazzo
  • [Genome] kate Re: maf files   Brooke Rhead
• [Genome] Problem with sequence length in drosophila   Leon-Charles Tranchevent
  • [Genome] Problem with sequence length in drosophila   Brooke Rhead
• [Genome] BLAT results on Genome browser   Brooke Rhead
• [Genome] tfbsConsSites.txt in hg17 and hg18   Takeshi Nagashima
  • [Genome] tfbsConsSites.txt in hg17 and hg18   Matt Weirauch
• [Genome] hg18:Most Conserved (phastConsElements17way)   Erika
  • [Genome] hg18:Most Conserved (phastConsElements17way)   Ann Zweig
    • [Genome] hg18:Most Conserved (phastConsElements17way)   Hiram Clawson
• [Genome] Custom plots   Anton Valouev
• [Genome] Custom plots   Heather Trumbower
  • [Genome] Custom plots   Ann Zweig
    • [Genome] Custom plots   Anton Valouev
• [Genome] Veranstaltungsahinweis Mittwoch, den 28.Maerz   Ulrike Gausmann
• [Genome] mapping chromosomal position between different version   Rong Lu (rlu at Princeton.EDU)
  • [Genome] mapping chromosomal position between different version   Rachel Harte
• [Genome] Gene symbol in table browser   Rachel Harte
• [Genome] Source for some UCSC table data   Philip M Terry
  • [Genome] Source for some UCSC table data   Archana Thakkapallayil
• [Genome] Help very early error: MySQL   Sadaf Naz
  • [Genome] Help very early error: MySQL   Archana Thakkapallayil
• [Genome] marker height in Genome Graphs?   Gordon Robertson
  • [Genome] marker height in Genome Graphs?   Archana Thakkapallayil
• [Genome] full list of possible values for track lines   Katharine Ng
  • [Genome] full list of possible values for track lines   Archana Thakkapallayil
• [Genome] MicroRNA target sites prediction   Lincoln, Sarah J.
• [Genome] myco   Persis Priya
  • [Genome] myco   Kayla Smith
• [Genome] CD24 gene on chromosome 6   Nganga, Alain
  • [Genome] CD24 gene on chromosome 6   Kayla Smith
• [Genome] "Known" mouse genes   Jorja Henikoff
  • [Genome] "Known" mouse genes   Kayla Smith
• [Genome] Source for some UCSC table data   Kate Rosenbloom
• [Genome] blat question   Vasta, Valeria
  • [Genome] blat question   Kayla Smith
• [Genome] genome graphs as webservice?   Nina Thiessen
  • [Genome] genome graphs as webservice?   Galt Barber
• [Genome] question   kaiman peng
  • [Genome] question   Brooke Rhead
• [Genome] SNP ID vs rs number   Torill Fladvad
  • [Genome] SNP ID vs rs number   Heather Trumbower
• [Genome] Customer Track Security   Hu, Xiaolan
  • [Genome] Customer Track Security   Donna Karolchik
• [Genome] Chained blastz alignments   Eric Just
  • [Genome] Chained blastz alignments   Angie Hinrichs
    • [Genome] Chained blastz alignments   Eric Just
    • [Genome] Chained blastz alignments   Eric Just
• [Genome] oryLat1 genome assembly   Namshin Kim
  • [Genome] oryLat1 genome assembly   Brooke Rhead
    • [Genome] oryLat1 genome assembly   Namshin Kim
      • [Genome] oryLat1 genome assembly   Brooke Rhead
• [Genome] about sno/miRNA Track   Makiko Otsuji
  • [Genome] about sno/miRNA Track   Fan Hsu
• [Genome] CG and NM_   Jay an
  • [Genome] CG and NM_   Rachel Harte
• [Genome] RE1 site SNP analysis...   JONATHAN COOPER
  • [Genome] RE1 site SNP analysis...   Rachel Harte
• [Genome] Getting a list of genes and their details from coordinates   alice_yamada at agilent.com
  • [Genome] Getting a list of genes and their details from coordinates   Rachel Harte
• [Genome] optimal settings for aligning medium length oligos   Mark Cowley
  • [Genome] optimal settings for aligning medium length oligos   Rachel Harte
• [Genome] Obtaining repeatmasked UCSC sequence via Bio::Das?   Ian Donaldson
  • [Genome] Obtaining repeatmasked UCSC sequence via Bio::Das?   Rachel Harte
• [Genome] Standalone BLAT and very short sequences   calhoujd at notes.udayton.edu

Last message date: Sat Mar 31 10:14:18 PST 2007
Archived on: Sun Apr 1 13:19:42 PST 2007

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...