[Genome] Getting a list of genes and their details from coordinates

[alice_yamada@agilent.com]

Hi,

 

I was wondering if you could help me figure out the most efficient way to go from chr coordinates to gene symbols, intron/exon locations, and other details of the genes.  I have a list of coordinates that I am trying to identify whether they reside in genes or not and if so, whether they reside in exons or not.  

 

To start, I have uploaded my regions as custom tracks to find overlap with Known or RefSeq gene.  This gives me the regions that have genes, but not which ones in the Table output.  I can get the info I want from the Genome Browser links, but when I have so many of them, this gets painful.

 

Any insight on how I can convert chr coordinates into annotated lists of genes and their exon/intron overlap structure will be much appreciated!  

 

Thanks,

Alice