[Genome] oryLat1 genome assembly

[Namshin Kim]

Hi Brooke,

Thank you for your fast reply.

There are two thing I found in webpage.

1. http://hgdownload.cse.ucsc.edu/goldenPath/gasAcu1/multiz8way/
fugu genome assembly used for multiz is fr2 not fr1.

2. http://hgdownload.cse.ucsc.edu/goldenPath/danRer4/bigZips/chromFa.tar.gz
I think someone forgot to add chrNA_random and chrUn_random in above tar.gz

Yours,
Namshin Kim

On 3/28/07, Brooke Rhead <rhead at soe.ucsc.edu> wrote:
>
> Hello Namshin,
>
> We have now made the oryLat1 assembly data available on our downloads
> server, here:
>
> http://hgdownload.cse.ucsc.edu/downloads.html#medaka
>
> Please let us know if you have any questions.
>
> --
> Brooke Rhead
> UCSC Genome Bioinformatics Group
>
>
> Namshin Kim wrote:
> > Hi,
> >
> > I downloaded gasAcu1 multiz8way alignments and found that I need oryLat1
> > genome assembly.
> > I tried to download from Ensembl, but it seems there are no chrM or
> chrUn
> > chromomsomes
> > due to slight differences between Ensembl and UCSC version of genome
> > assemblies.
> > Would you tell me where can I download UCSC version or oryLat1 genome
> > assembly?
> >
> > Yours,
> > Namshin Kim
> > _______________________________________________
> > Genome maillist  -  Genome at soe.ucsc.edu
> > http://www.soe.ucsc.edu/mailman/listinfo/genome
> >
>