[Genome] dbsnp 127

[Heather Trumbower]

Dmitriy:

I have done an initial load of dbSNP build 127 for hg18.   It is available 
at http://genome-test.cse.ucsc.edu.   Please note that it has not yet been 
validated or reviewed.   That work will be happening over the course of 
the next few weeks.

I notice an increase in the number of SNPs with the reference allele not 
reverse complemented.   Build 126 for hg18 has 120K such SNPs; build 127
appears to have 1.5 million.

I also notice an increase in the number of SNPs with an unexpected format 
for the observed string.  Build 126 for hg18 has 357 such SNPs; build 127 
appears to have over 6,000.

Feel free to write to me directly if you have any questions or comments 
about this data.

Are you primarily interested in human data?   If other species, which 
ones?

Heather Trumbower
UCSC Genome Bioinformatics Group


On Fri, 9 Mar 2007, dmitriy wrote:

> Hi
>
> With today's release of dbsnp 127, what is the expected release of
> UCSC that will include it?
>
> Thanks
>
> Dmitriy Sonkin
> Software engineer / bioinformatician
> HPCGG (Harvard Partners Center for Genetics and Genomics)
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