[Genome] HapMap SNPs

[Heather Trumbower]

Kari:

We have a HapMap SNPs track available in the hg17 browser on our test 
server http://genome-test.cse.ucsc.edu.   It is a composite track, with 4 
subtracks for each of the 4 populations.  It also uses a table called 
"hapmapAllelesSummary", which available in the table browser.   You could 
use the name column of hapmapAllelesSummary for the full list of all SNPs
(it is the union of the SNPs from the 4 populations).

This track should be on our production server (genome.ucsc.edu) within a 
few weeks.  I am making some final changes, you can just email me directly 
if you have any additional questions about this track in the next few weeks.

Heather Trumbower
UCSC Genome Bioinformatics Group


On Thu, 8 Mar 2007, Kari Ohlsen wrote:

>
> Hello,
>
> I was wondering if you know of any way I can get a list of SNPs which
> have been Genotyped in HapMap.  I just need the SNP names themselves,
> not genotype freq etc.  I found the LDHapmap track on build hg17, but I
> don't want to download that, since it is HUGE, and contains all the
> cross-comparision info, which I don't need.
>
> Thanks,
> Kari Ohlsen
> ==================================
> Kari L. Ohlsen, Ph.D.
> Director, Bioinformatics
> TorreyPines Therapeutics Inc.
> 11085 N. Torrey Pines Road
> San Diego, CA  92037
> (858) 623-5665 x147 office
> (858) 623-5666 fax
> ===================================
>
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