[Genome] liftOver over.chain for rat

[Kayla Smith]

Benoit,

http://hgdownload.cse.ucsc.edu/goldenPath/rn3/liftOver/rn3ToRn4.over.chain.gz

Kayla Smith
UCSC Genome Bioinformatics Group

Benoit Ballester wrote:
> Hi,
> 
> I would like to map coordinate from the rat assembly 3.1 to the rat 
> assembly 3.4 using liftOver. But the only over.chain file I have found 
> is rn4ToRn3.over.chain.gz  available here 
> http://hgdownload.cse.ucsc.edu/goldenPath/rn4/liftOver/
> which, if I am right, contain data to convert rn4(v3.4) to rn3(v3.1).
> 
> Do you have a over.chain file for the over way round rn3torn4 ??
> 
> Thanks,
> 
> Benoit
> 
>