[Genome] func column in snp126 table

Amit Indap aindap at yahoo.com
Fri Mar 2 13:28:16 PST 2007


Hi UCSC

I was trying to look in the mailing list archives and
dbSNP page on explanations for some of the functional
classes of snps. I'm a bit confused about what 

unknown, locus, coding, and cds-reference mean. 
If it were coding, you would be able to classify the
snp as coding-synonymous or coding-nonsynon. I'm
guessing unknown means intergenic. 

If you can point me to some documentation that helps
explain these classifications that would be great!

Thanks,

Amit Indap
Cornell University


 
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