[Genome] how to find a snp on zebra fish...

[Ann Zweig]

Hello Sridhar,

	We archived the oldest version of the zebrafish (danRer1), but we still 
have the three more recent versions available in our active browser.

	When we create a SNP track for an assembly, we get the data from dbSNP. 
  dbSNP has about 2,000 SNPs for zebrafish right now.  We would like to 
create a SNP track for danRer4, but it is not a high priority at this time.

	Please see the NCBI SNP Summary page for more details: 
http://www.ncbi.nlm.nih.gov/SNP/snp_summary.cgi


Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu


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Sridhar Prathikanti wrote:
> Dear Sir,
> 
> I just left the NIH Bethesda campus Dec. 2006 and am trying to wrap some
> research.
> 
> I am trying to find out whether the human SNP 671871 
> http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?rs=671871
> 
> exists in the Zebrafish?  I noticed you pulled down the Zebrafish and
> have it in archives but without BLAT.
> 
> May I please speak with you over the telephone for 5 minutes.
> 
> regards,
> 
> Sridhar Prathikanti, MD
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome